PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024384
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 521aa    MW: 59096.2 Da    PI: 9.9611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024384genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3802.9e-1161465171374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+av+++d + a++lL++++ ++sp gd++qRla +f+ +L+arla+++s++yk l  ++t     +++l+a++lf  ++P+ k+s+++ 
  Lus10024384 146 LRTLLITCAQAVAADDGTSASELLKQIRLHSSPFGDANQRLANCFADGLEARLAGTGSQIYKGLVDKKTC---AADVLKAYHLFLAACPFKKLSNFVS 240
                  6789************************************************************999998...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I      +++vH+iDf++ +G+QWp+L+q ++ Rp+gpp+lR+Tg++ p++g   +e++e+tg+rLa +Ae+++vpfe+n+ +akr+e+++le+L
  Lus10024384 241 NKTIRTVSGDATKVHVIDFGVLYGFQWPTLIQRMSWRPGGPPKLRVTGIDFPQPGfrPAERVEATGRRLAAYAEKFKVPFEYNA-IAKRWENVQLEDL 337
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E ++Vn+ ++ ++llde+v+++s+r+ vL l+k+++P+++++   +   n++ F++rf eal ++sa+fd+le+ +pre++er+ +E+e++gr
  Lus10024384 338 KIEKDEFVIVNCLYRAKNLLDETVCVDSPRKIVLGLIKRINPRLFIHGVINGAFNAPFFVTRFREALFHFSAMFDMLETVVPREDQERMLIEKEIFGR 435
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+ nv+aceg er+er et+++W+ r  +aGF++++ +++++k+a+   ++ + + + ++e++++l++gWk+r ++++S+W+
  Lus10024384 436 EALNVIACEGWERVERPETYKQWQVRCLRAGFEQLHWDKETMKEANKKAKELYHKDFLIDEDNKWLLQGWKGRIIYALSMWK 517
                  *****************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.745120497IPR005202Transcription factor GRAS
PfamPF035149.8E-114146517IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MPAGISSRVR ISQFNKGVEE ANKFLPNGNN LFLNIQTNAR IRASNDVKVE SLPRGRKNIL  60
IREDVPIEEE RSTKVLAVHK DSNLPPDVFD SVLLCSVGKG KEDLTALRES LKNATIRDSQ  120
NGQHKTFRQG RGRMKKGAAK KDVVDLRTLL ITCAQAVAAD DGTSASELLK QIRLHSSPFG  180
DANQRLANCF ADGLEARLAG TGSQIYKGLV DKKTCAADVL KAYHLFLAAC PFKKLSNFVS  240
NKTIRTVSGD ATKVHVIDFG VLYGFQWPTL IQRMSWRPGG PPKLRVTGID FPQPGFRPAE  300
RVEATGRRLA AYAEKFKVPF EYNAIAKRWE NVQLEDLKIE KDEFVIVNCL YRAKNLLDET  360
VCVDSPRKIV LGLIKRINPR LFIHGVINGA FNAPFFVTRF REALFHFSAM FDMLETVVPR  420
EDQERMLIEK EIFGREALNV IACEGWERVE RPETYKQWQV RCLRAGFEQL HWDKETMKEA  480
NKKAKELYHK DFLIDEDNKW LLQGWKGRII YALSMWKPAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5215352026382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308163.30.0scarecrow-like protein 9 isoform X2
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3N7F3E70.0A0A3N7F3E7_POPTR; Uncharacterized protein
STRINGLus100243840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein