PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 277aa    MW: 31165.2 Da    PI: 4.75
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024380genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31113169258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK +k+s++prsYY+Ct ++C++kk+vers++++++++itYeg H h
  Lus10024380 113 DDGYKWRKYGQKAIKNSPYPRSYYKCTNRRCSAKKQVERSRDEQDTLIITYEGLHLH 169
                  8******************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.003107172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-29108169IPR003657WRKY domain
SuperFamilySSF1182902.35E-26108169IPR003657WRKY domain
SMARTSM007747.2E-34112171IPR003657WRKY domain
PfamPF031063.1E-25113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEFQTVDESH PTHTTWSDDE LIVQELLDDD SPFFLLSEQQ HHYSNAELTD QLLQLSNNLQ  60
YSGPTVAAIQ DTLPLKTWSI LNSPSSLLER GINRIDGSKY TLKLKCLENG MADDGYKWRK  120
YGQKAIKNSP YPRSYYKCTN RRCSAKKQVE RSRDEQDTLI ITYEGLHLHF AYPYYFPLNP  180
DGGEDHHDPR PPKRTKTSSP EAEAEQSRFG GEDGLFEMKA ADSSQGLLED VVLPFVIRYP  240
TTVDNVNSSS SNLLSSNSCS SSSSLSWSST SSQDSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-191111691674Probable WRKY transcription factor 4
2lex_A2e-191111691674Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100243800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-45WRKY DNA-binding protein 49