PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 31165.2 Da PI: 4.75 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4.1e-31 | 113 | 169 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK +k+s++prsYY+Ct ++C++kk+vers++++++++itYeg H h Lus10024380 113 DDGYKWRKYGQKAIKNSPYPRSYYKCTNRRCSAKKQVERSRDEQDTLIITYEGLHLH 169 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.003 | 107 | 172 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-29 | 108 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 108 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.2E-34 | 112 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 113 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MEFQTVDESH PTHTTWSDDE LIVQELLDDD SPFFLLSEQQ HHYSNAELTD QLLQLSNNLQ 60 YSGPTVAAIQ DTLPLKTWSI LNSPSSLLER GINRIDGSKY TLKLKCLENG MADDGYKWRK 120 YGQKAIKNSP YPRSYYKCTN RRCSAKKQVE RSRDEQDTLI ITYEGLHLHF AYPYYFPLNP 180 DGGEDHHDPR PPKRTKTSSP EAEAEQSRFG GEDGLFEMKA ADSSQGLLED VVLPFVIRYP 240 TTVDNVNSSS SNLLSSNSCS SSSSLSWSST SSQDSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-19 | 111 | 169 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-19 | 111 | 169 | 16 | 74 | Probable WRKY transcription factor 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10024380 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 2e-45 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024380 |