PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024362
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 264aa    MW: 29943.3 Da    PI: 7.0883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024362genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000186486123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Lus10024362 64 YSCTFCRREFRSAQALGGHMNVH 86
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-66190No hitNo description
PROSITE profilePS5015711.1576491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEPPPPQYWM WNGTTNNSKS LQPLAPPPNP LCSSYEEYSS WEEQAFAEDA AGPHGGCVWP  60
PRSYSCTFCR REFRSAQALG GHMNVHRRDR ARLKQSPIHP MEIPIQSSLP TSPPPSLSYH  120
FLDNPYKPPP DLPTSNNPNR VSTDNNCSEK SFFPWEEERI KRKRPPDLPR RSNEEDEMTS  180
LNLVLRQSSQ STVSSEEDEV AMGRGKRRRI DDTASLSLPF MLHEIRNDNK NNSNKKNSVG  240
GCAREELDLE LRLGSDRPQV KSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125986229superman protein
2l1o_A2e-125986229Transcriptional regulator SUPERMAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100243620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-24C2H2 family protein