PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024246
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 785aa    MW: 84477.2 Da    PI: 9.6058
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024246genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.4e-30286345159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt   +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Lus10024246 286 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGpTCPVRKQVQRCAEDMSILITTYEGNHNHP 345
                  58***************************88****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31271347IPR003657WRKY domain
SuperFamilySSF1182906.93E-27279347IPR003657WRKY domain
PROSITE profilePS5081128.231281347IPR003657WRKY domain
SMARTSM007744.6E-36286346IPR003657WRKY domain
PfamPF031064.6E-26287345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MDVDKDAVKR RSNSSSASSY SSSSGDRTVV IKEVDALLNP SDSAPNLAPP QETTAAASKE  60
RSSSPMNPPA DSIVIPSSTQ KDQRDQLEKT RSEMGEVMEE NRRLKLYLEQ IMKDYKTLES  120
KFHEIVQQQE EEHQQSKKST NSVGKKSPLL MVEDDDDGDE QGDEHLQVSL SLGRSPSRDL  180
KKMNNNNNLG EVKGSSSSSL SLTLDYSRFE GASNSNGEGA KRSPLSSSFE DRDVKEDTTK  240
PSPSNTNANT SKRSSEDDEV SQQQQQNPAA KKARVSVRAR CDTPTMNDGC QWRKYGQKIA  300
KGNPCPRAYY RCTVGPTCPV RKQVQRCAED MSILITTYEG NHNHPLPMSA TAMASTTSAA  360
ASMLLSASSS STPTTAAATA AAAANLNGLN YYINNSDNNN PSPFSSSLRP PFYFQPNNNN  420
YMNSPYSSSP TCPTITLDLA SNNNNSSNNT PNNILHSSLP SRFSSLPRFP PNSLNFASTE  480
PSFWGPTTAT NNGILNYGIG NSASNTSTTS TSTNQLPYYS TGRLTSAVGP TSSEVAAATK  540
AITADPSFQS ALAAALTTII GNNGKSNNYS GSNNSSSGGM EWRSSVGGEA GAHLFPVASS  600
SGLGRAADSV GKDKSNQAAA AASSGRKNQQ LMFLPSSSRS ASASPPDNKD YLRVSRTSPT  660
RRRSTALIPR RCSSFTTRHL HSLLISIAKP KTRRRWYFDP LATVYHSIIA QTTSPHRKGF  720
LAAANVSILP LNSIEKPTTP HHKGFSLLLL STQLDLRPPL ITAATNYYRT SLTTSIIRFT  780
DPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19273347174WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100242460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-39WRKY DNA-binding protein 9