PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024029
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 551aa    MW: 61333.6 Da    PI: 5.941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.38e-911835492374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  v+ L+++A++++s++++la+a+L+rl+ +  ++g+p++R+a +f+eAL++ l+      +   p+  +s+++++e++ a+++fs +sPi+ f+h+taN
  Lus10024029 183 VQELIRAADCFDSNQFQLAHAILERLNSRLPSSGKPLHRAAIFFKEALQSLLTV-----STRPPAYLSSWSETVETIRAYRAFSGISPIPMFAHFTAN 275
                  689*************************************************98.....55567777788889************************* PP

         GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  qa+l++++g   + +H++Dfdi+ G Q+++++++L++R      g+p lR+T+v+ +e   + e++ ++e L++fA+el+++f++++++ +++e+l++
  Lus10024029 276 QALLDSLDGPsiTFIHVVDFDIGLGCQYASFMRELTERGsvceFGAPILRVTAVVTEE--YAIETKLIRESLTQFADELKLRFQIEFVLLRTFEMLSF 371
                  *********98899************************9777678***********66..99999********************************* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres.eerikv 285
                  +++++ +gE++aV l+  ++r l    sl+s  + +++ ++++sP vvv+v+ e   + +++sF + f++ le+ys +f+sl   +++  s e+ +k+
  Lus10024029 372 KSIKFVEGEKTAVLLSPFIFRRL----SLTSGVTVFISDLRRVSPSVVVFVDGEawGESGTSSFRRNFVNNLEFYSIMFESLdGGGAAMGSgEWVRKI 465
                  **********************9....77777889*******************6557799*********************7667777778999*** PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  E  l++++i  +v   g+        l  W+e +  aG+ p+  s++a  qa++ll kv+s+g+ v +++++lvl+W+drpLv++SaWr
  Lus10024029 466 EMLLMRPRILAAVEGCGRG-----AALPPWKEVFAGAGMWPIGWSQFADFQAETLLGKVQSRGFYVAKRQAELVLCWHDRPLVATSAWR 549
                  ***********99888877.....99**************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.943156529IPR005202Transcription factor GRAS
PfamPF035142.8E-88183549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MKVPLPVSCK STLLNSDSLI PPPPRTTTNN NNNNNLSLAP SICYEPTSVL ELGRTPTSPV  60
ATKPPPADPI DWDDHVLENF NWDSIMKELD FHDHTNNNNN NNPIKPSNLI NLPHFDTPSA  120
GDHHHVFGSS LPGLDQSTQF VHHPDYADVF LNSIPNTHDF STLELSHHSF PNSNSNFQGF  180
DSVQELIRAA DCFDSNQFQL AHAILERLNS RLPSSGKPLH RAAIFFKEAL QSLLTVSTRP  240
PAYLSSWSET VETIRAYRAF SGISPIPMFA HFTANQALLD SLDGPSITFI HVVDFDIGLG  300
CQYASFMREL TERGSVCEFG APILRVTAVV TEEYAIETKL IRESLTQFAD ELKLRFQIEF  360
VLLRTFEMLS FKSIKFVEGE KTAVLLSPFI FRRLSLTSGV TVFISDLRRV SPSVVVFVDG  420
EAWGESGTSS FRRNFVNNLE FYSIMFESLD GGGAAMGSGE WVRKIEMLLM RPRILAAVEG  480
CGRGAALPPW KEVFAGAGMW PIGWSQFADF QAETLLGKVQ SRGFYVAKRQ AELVLCWHDR  540
PLVATSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2518854825378Protein SCARECROW
5b3h_A1e-2518854824377Protein SCARECROW
5b3h_D1e-2518854824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310797.10.0scarecrow-like protein 15
SwissprotO232101e-154SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2K1ZNE40.0A0A2K1ZNE4_POPTR; Uncharacterized protein
TrEMBLA0A385JI670.0A0A385JI67_POPTO; GRAS family transcription factor
STRINGLus100240290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-154GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]