PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 551aa MW: 61333.6 Da PI: 5.941 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 296.3 | 8e-91 | 183 | 549 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 v+ L+++A++++s++++la+a+L+rl+ + ++g+p++R+a +f+eAL++ l+ + p+ +s+++++e++ a+++fs +sPi+ f+h+taN Lus10024029 183 VQELIRAADCFDSNQFQLAHAILERLNSRLPSSGKPLHRAAIFFKEALQSLLTV-----STRPPAYLSSWSETVETIRAYRAFSGISPIPMFAHFTAN 275 689*************************************************98.....55567777788889************************* PP GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 qa+l++++g + +H++Dfdi+ G Q+++++++L++R g+p lR+T+v+ +e + e++ ++e L++fA+el+++f++++++ +++e+l++ Lus10024029 276 QALLDSLDGPsiTFIHVVDFDIGLGCQYASFMRELTERGsvceFGAPILRVTAVVTEE--YAIETKLIRESLTQFADELKLRFQIEFVLLRTFEMLSF 371 *********98899************************9777678***********66..99999********************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres.eerikv 285 +++++ +gE++aV l+ ++r l sl+s + +++ ++++sP vvv+v+ e + +++sF + f++ le+ys +f+sl +++ s e+ +k+ Lus10024029 372 KSIKFVEGEKTAVLLSPFIFRRL----SLTSGVTVFISDLRRVSPSVVVFVDGEawGESGTSSFRRNFVNNLEFYSIMFESLdGGGAAMGSgEWVRKI 465 **********************9....77777889*******************6557799*********************7667777778999*** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E l++++i +v g+ l W+e + aG+ p+ s++a qa++ll kv+s+g+ v +++++lvl+W+drpLv++SaWr Lus10024029 466 EMLLMRPRILAAVEGCGRG-----AALPPWKEVFAGAGMWPIGWSQFADFQAETLLGKVQSRGFYVAKRQAELVLCWHDRPLVATSAWR 549 ***********99888877.....99**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.943 | 156 | 529 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-88 | 183 | 549 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MKVPLPVSCK STLLNSDSLI PPPPRTTTNN NNNNNLSLAP SICYEPTSVL ELGRTPTSPV 60 ATKPPPADPI DWDDHVLENF NWDSIMKELD FHDHTNNNNN NNPIKPSNLI NLPHFDTPSA 120 GDHHHVFGSS LPGLDQSTQF VHHPDYADVF LNSIPNTHDF STLELSHHSF PNSNSNFQGF 180 DSVQELIRAA DCFDSNQFQL AHAILERLNS RLPSSGKPLH RAAIFFKEAL QSLLTVSTRP 240 PAYLSSWSET VETIRAYRAF SGISPIPMFA HFTANQALLD SLDGPSITFI HVVDFDIGLG 300 CQYASFMREL TERGSVCEFG APILRVTAVV TEEYAIETKL IRESLTQFAD ELKLRFQIEF 360 VLLRTFEMLS FKSIKFVEGE KTAVLLSPFI FRRLSLTSGV TVFISDLRRV SPSVVVFVDG 420 EAWGESGTSS FRRNFVNNLE FYSIMFESLD GGGAAMGSGE WVRKIEMLLM RPRILAAVEG 480 CGRGAALPPW KEVFAGAGMW PIGWSQFADF QAETLLGKVQ SRGFYVAKRQ AELVLCWHDR 540 PLVATSAWRC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-25 | 188 | 548 | 25 | 378 | Protein SCARECROW |
5b3h_A | 1e-25 | 188 | 548 | 24 | 377 | Protein SCARECROW |
5b3h_D | 1e-25 | 188 | 548 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024029 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310797.1 | 0.0 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-154 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A2K1ZNE4 | 0.0 | A0A2K1ZNE4_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JI67 | 0.0 | A0A385JI67_POPTO; GRAS family transcription factor | ||||
STRING | Lus10024029 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5959 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-154 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10024029 |
Publications ? help Back to Top | |||
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