PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024006
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 589aa    MW: 65279.6 Da    PI: 4.3767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.61.7e-21181672128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                  p GfrF Ptd+el+ +yL + v++   ++e + i++ di++ ePw+L +          ++ e+++yfF+  +kk  t+k++ r++    g W+   +
  Lus10024006  18 PSGFRFLPTDDELLGHYLYNYVKRIYEPEEFFpIRHRDIHNDEPWELWQssqiigdnGGSGPENDVYFFADLKKKRDTDKNHGRKIGkgGGNWHGEDR 115
                  78********************99886664455**************6435555543222255688************99999976534778**9998 PP

          NAM  89 dkevlsk......kgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                   k++  +      +  +         vglkk + + +g+ ++ e+ +W++hey++
  Lus10024006 116 GKKLNLEiddpggG--EessppvanwVGLKKRFSYRNGNLKS-EQQKWILHEYSI 167
                  88888877777641..1457888888*********9777666.89********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-2116175IPR003441NAC domain
PROSITE profilePS5100525.95217186IPR003441NAC domain
PfamPF023652.4E-1618167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAIEPDIRRP GPETNLRPSG FRFLPTDDEL LGHYLYNYVK RIYEPEEFFP IRHRDIHNDE  60
PWELWQSSQI IGDNGGSGPE NDVYFFADLK KKRDTDKNHG RKIGKGGGNW HGEDRGKKLN  120
LEIDDPGGGE ESSPPVANWV GLKKRFSYRN GNLKSEQQKW ILHEYSISND GGLNYFSEVV  180
CLLRNNDSPT VRQISAAFVR VKRPIEEYIN VRAGKSDSES DGRTKKRVCY STALTSQPFA  240
ENVASSNPTS VKEVLNSVFS SNFDPVVQLD EKVTCLNPSS NQSNYARTSY NSVFSSSGFG  300
LVSQLPPLVE NIMCSNPSSN QLECDQYNPY HIKNKALMIE ASCSYQDMRI STYQIDPLTE  360
FGSMFEQSST SNAATASASE FGSMFKQGST SNTTTAPTSE FSSMFEQGST SNAATASTSE  420
FGSMFEQGSM FEQGSTSNAA TASTSELGSM FKQGSTSNAA TASTSEFDTK YEPITFNEIC  480
RGVYRDSMPL GLSAYEIQSL LYPSTSVQCN EEDHQTGRIE SAAIDGALEQ QQQVQIPEDE  540
QQPPWAVISN EIVLKDDDAS WFDVIDFDCD DSLLNVSQYD IEPPTGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100240060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-15NAC family protein