PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023931
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 332aa    MW: 37933.6 Da    PI: 5.8374
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023931genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.21.6e-28142192252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  e++isl++l+ yF++++kdAAke+gvc+T+LKriCRq+GIkRWP+Rkik++
  Lus10023931 142 EQKISLQMLRGYFAGSLKDAAKEIGVCATTLKRICRQHGIKRWPSRKIKKV 192
                  689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.598128212IPR003035RWP-RK domain
PfamPF020423.5E-24145192IPR003035RWP-RK domain
SuperFamilySSF542772.78E-19243330No hitNo description
SMARTSM006661.6E-19245331IPR000270PB1 domain
PROSITE profilePS5174519.553245331IPR000270PB1 domain
PfamPF005641.5E-14246330IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.0E-19246328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDADSFTPFP DFNQFASSSP DSINWDFVHE SLLYQDYSWF DEIDSGFDFI PQPDLHLLPV  60
HTVEEEAIKP TSEASNSGKE GTNFSWDCVP KVELREEGFK VLTRWEDEPP EMEFESQKGI  120
LIGWSTTQQS KSRKKKRAGK MEQKISLQML RGYFAGSLKD AAKEIGVCAT TLKRICRQHG  180
IKRWPSRKIK KVDHSLKKLQ RVIDSVHEGA QIGSFYSDFP QLNTTNITTT SSEETSKAEV  240
DDRSIFRVKA RFGDENVRLV MSPSWGVREL KQEIGKRFGV QDAVALGFVG FRYLDEDGEW  300
VHLSCDDDLQ DCKEMHRVSD RNAIRISLHH T*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518588.11e-61protein NLP2
RefseqXP_028222990.11e-61protein NLP2-like
SwissprotQ9SFW89e-44NLP5_ARATH; Protein NLP5
TrEMBLA0A371EY908e-62A0A371EY90_MUCPR; Protein NLP2 (Fragment)
STRINGLus100239310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2273623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.12e-33Nin-like family protein