PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023930
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 810aa    MW: 90676.6 Da    PI: 7.1841
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023930genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.14.1e-29529579252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRqyGI+RWP+Rkik++
  Lus10023930 529 EKTVSLDVLRQYFAGSLKDAAKSLGVCPTTLKRICRQYGINRWPSRKIKKV 579
                  799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.53518599IPR003035RWP-RK domain
PfamPF020423.3E-25531579IPR003035RWP-RK domain
SuperFamilySSF542776.45E-23713802No hitNo description
Gene3DG3DSA:3.10.20.2401.9E-22715798No hitNo description
SMARTSM006662.1E-22716801IPR000270PB1 domain
PROSITE profilePS5174523.946716801IPR000270PB1 domain
PfamPF005641.2E-17717799IPR000270PB1 domain
CDDcd064075.36E-37717799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MDHDGGGAFT PNSTFGNLIS SSTMDLDPFM DQIFDERCWM GTPPDGFSFL SQPSPPTSLI  60
IPELQHHNPN PQQDINFQGG RHENRQFIPP SIKDRLEYAI RKLKEYTDPR DVLVQIWVPI  120
TKGGKHLLTT KDQPYFITPK CMNLASYRNV SKEYHFGADL DSQVLVGLPG RVFLGKLPEW  180
TPDVRYFKPE EYPRKSYAAQ YSISGSLAFP VFERGNGTCL GVVEVITTTR DIQYRPELEN  240
VCKALEAVDL SSSVDFIPPS VKGCKEFCEA AVPELFDISA SVCKTHRLPL ALTWAPCFQQ  300
GKGGCRHFDE SYARYISTVD AACFVAHTEL LAFHTACSEQ YLFLGQGLVG KAFTTNKQCF  360
APNVSALSKA AYPLSHHAMV VGLQAAIAIP LQSSTTGFVL ELFLPKDCQD PGEQNKLRDM  420
LPLTVQQASR SLHVVMEREE LEEGRSFQSV KKTSHEEPSA WISQFMEVQP KRDDTFSFSR  480
ECLKEEPQEE FKVTWENNQR EVNRNTLVST EHPSSSIRRM SEKRRTKTEK TVSLDVLRQY  540
FAGSLKDAAK SLGVCPTTLK RICRQYGINR WPSRKIKKVG HTLKKLQLVI DSVQGADGAI  600
QIGSFYTTFP DLTSPNHSGN VHCQQVVHAQ PELNTNTSKS TSTSSSQSSG CSSCYSAGAE  660
LKRTRSDAEL LVLNHDYEAQ PLLSRSQSHR LLLGGGECSG SGFHKPGCRK LRDGSDFRVK  720
ASFGSDKVRF SLPSSWGFKE FKQEVMNKFN VDESGACRVD LKYLDDDQEW VLLTCDDDLE  780
ECKDVYRSEQ RHTIKLSLHM KPGAVPAMN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690600.10.0protein NLP2-like
RefseqXP_021690601.10.0protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A2C9V1W70.0A0A2C9V1W7_MANES; Uncharacterized protein
STRINGLus100239300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein