PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 262aa MW: 28371.1 Da PI: 7.9063 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.6e-05 | 185 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs+ L H+r+H Lus10023912 185 HECSICGTGFSSGQALGGHMRRH 207 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.2E-9 | 112 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.43E-9 | 112 | 135 | No hit | No description |
SMART | SM00355 | 0.31 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.43E-9 | 180 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 183 | 207 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.8E-11 | 184 | 208 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 185 | 207 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.575 | 185 | 212 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 187 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVMDQSMVVD GLTLDVGCCS VKGKRTKRQR PLSPLPFPGG DIVTNNQSSA AESSCTVEEE 60 DMANCLILLA QGGRQQLLRQ EEEPRKLSIA SDSKQVAAEE GAVTVAERGV FVYQCKTCER 120 CFSSFQALGG HRASHKKPRT TDQADVDRKL SSGDRKLKEE INRGEELSLS LRIVTPAAVK 180 PNKVHECSIC GTGFSSGQAL GGHMRRHRTV VPATSTSAAV VVRSGLEWDL NLPAPEEGRE 240 SNKFRFAFSS SSAFPLVDCH Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023912 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428462.2 | 3e-56 | zinc finger protein ZAT5 | ||||
Refseq | XP_006493540.1 | 3e-56 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2H5QKA6 | 1e-54 | A0A2H5QKA6_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SM30 | 1e-54 | V4SM30_9ROSI; Uncharacterized protein | ||||
STRING | Lus10023912 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-36 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10023912 |