PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 23307.6 Da PI: 9.9849 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 8 | 97 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +p + + l++p +f++++ ++ + ++l+ ++g +W++ + k ++++++ +GW +Fv++ +++g +++F+++g+ f +v++f+ Lus10023844 8 HKIILPRTLHDR-KLRIPDNFIKKFAND--LTPLVRLTVPDGHVWRIGI--VKADDKFWFHDGWHDFVESYSIRVGYMLIFRYEGNAIF--NVHIFN 97 555555555555.5***********655..4458***************..********************************998888..888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-22 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-22 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.58E-17 | 5 | 97 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 6 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-13 | 7 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-11 | 15 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MPARPYFHKI ILPRTLHDRK LRIPDNFIKK FANDLTPLVR LTVPDGHVWR IGIVKADDKF 60 WFHDGWHDFV ESYSIRVGYM LIFRYEGNAI FNVHIFNLSA SEINYQTNSL SGKRCLLFDE 120 LEDEDSAEYL QNTVPLYQVP FAMKGNNPQL NRASNPPNPA TQPAAVDVNR QFNAFDQRNA 180 SDAPVKVPKK RGRKKIKPDP GK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023844 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021643265.1 | 1e-76 | B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
TrEMBL | A0A2C9U6M7 | 2e-72 | A0A2C9U6M7_MANES; Uncharacterized protein | ||||
STRING | Lus10023844 | 1e-149 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-53 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10023844 |