PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023843
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 390aa    MW: 43463.8 Da    PI: 8.8928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023843genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.5e-1216104898
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +  l +grl+++k+f++e+g+    s + +l+ ++g++W++ l  +y ++ +r++l++G ++F +   +++g  ++F++ g+s+f  + +vf+
  Lus10023843  16 PEDLDEGRLMISKDFVTEYGHL--LSEEAVLKVSDGEVWKIGLakQYFRREERIWLSAGFRRFLEYYSIDVGYLLIFEFRGSSRF--LTSVFD 104
                  45566789***********966..8889***************6555899999*************************9887887..888876 PP
2B332.12e-10295387898
                  -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++l+sg++++p + a+ h + ++  ++tl++ d +     + evkl  +k+ gr ++  G  + +k +gL +gD+++F+l++r++  ++v++f 
  Lus10023843 295 RSHLQSGNMSIPDRIADVHlM-ENLPKITLRVVDGDEgvvDEREVKLFETKHYGRKYIC-GLMSACKKHGLVAGDVCLFELVERETNLFHVRIFH 387
                  56788899********99962.3333456776665558998899999778888887776.9*********************9988878999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-155107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.3069106IPR003340B3 DNA binding domain
SMARTSM010194.8E-610106IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-1610113IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-816103IPR003340B3 DNA binding domain
CDDcd100173.37E-821104No hitNo description
Gene3DG3DSA:2.40.330.106.3E-12282388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-10282388IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-10287386No hitNo description
PROSITE profilePS508636.428288389IPR003340B3 DNA binding domain
SMARTSM010192.4E-5289389IPR003340B3 DNA binding domain
PfamPF023622.6E-8294387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAFNNCSKRF WQIVYPEDLD EGRLMISKDF VTEYGHLLSE EAVLKVSDGE VWKIGLAKQY  60
FRREERIWLS AGFRRFLEYY SIDVGYLLIF EFRGSSRFLT SVFDLTACEI EYPISSSSPA  120
SGSDSDFDFD DPHRRRGKGA AAASNASGSR QKPQQGRTPH HFANLSISDS DSDVPGFRNG  180
SRGKRVIASS SESDSESGSD SDNADFRGKR KGKQLVAAAR KNHGNASSSR PQQPPNSAGV  240
SFAEDLWSKL KKSTIVKTQG FQSKFMTHSA ATQRAIRRAV DSDPKNPSFL VVIGRSHLQS  300
GNMSIPDRIA DVHLMENLPK ITLRVVDGDE GVVDEREVKL FETKHYGRKY ICGLMSACKK  360
HGLVAGDVCL FELVERETNL FHVRIFHSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023843
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100238430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-18B3 family protein