PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023816
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 364aa    MW: 40803.4 Da    PI: 7.2435
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023816genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.2e-30164218155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt++LHe+Fve+v++LGG++kAt k+il+lm+ +gLt+ hvkSHLQkYR+
  Lus10023816 164 KTRIRWTQDLHEKFVECVNRLGGADKATSKAILKLMDSEGLTIFHVKSHLQKYRI 218
                  68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-28162219IPR009057Homeodomain-like
SuperFamilySSF466891.56E-16163218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-21164219IPR006447Myb domain, plants
PfamPF002491.9E-6168217IPR001005SANT/Myb domain
PfamPF143799.0E-15248292IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVGKMTSPNV DFHDGLLINS NNNQLFMGQQ QEAWSNMGTA IRLESAKPSS SCIVSRFDSP  60
ASAFYATERY MGLQQYDHHM SGSHQDSSLQ LQQLMKQSSN YSVYHRRNQL EHLDFKPFQL  120
NLQDQKMQVG VPISQVGFQS RHDQNDLSPG GGGSMGSGAG LSNKTRIRWT QDLHEKFVEC  180
VNRLGGADKA TSKAILKLMD SEGLTIFHVK SHLQKYRIAK YMPDTSEGKT DRRSVINDVS  240
QLDPKAGFQI REALQLQLDV RLHEQLKIQR NLQVRIEEQS KQLKMMFDHQ QQNKNGSSSI  300
SNNNNSSNNN LWGAFNVTTT TTTSNFQAGH HQPVLSTLED DVDEVSIAPE EGSENVNFPT  360
KIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-22164221158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-22164221158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-22164221158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-22164221158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-22164221259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023816
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744450.0JX174445.1 Linum usitatissimum clone LuBAC364K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308371.34e-84myb family transcription factor PHL5
TrEMBLA0A2K2A4K21e-82A0A2K2A4K2_POPTR; Uncharacterized protein
STRINGLus100238160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-67G2-like family protein