PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023615
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 562aa    MW: 60081.7 Da    PI: 7.4005
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023615genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-30197256159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt   +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Lus10023615 197 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGpTCPVRKQVQRCAEDMSILITTYEGNHNHP 256
                  58***************************88****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-32182258IPR003657WRKY domain
SuperFamilySSF1182904.32E-27190258IPR003657WRKY domain
PROSITE profilePS5081128.231192258IPR003657WRKY domain
SMARTSM007744.6E-36197257IPR003657WRKY domain
PfamPF031063.0E-26198256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGEVMEENRR LKLYLEQIMK EYKTLESKFH DIVQQQEEEH QQSKKSTDSV RKKSPLLMLE  60
DGDGDDDDEQ GDEQLQVSLS LGRSPSRELK KMNSNNLEEV KGSSSSSLSL TLDYSRFEGA  120
SNINGVGAKR MSPLSSSFED RDVKEDATKP SPSNTNANTS KRSSEDDEVS QQQQQQQNPA  180
AKKARVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVGPTCP VRKQVQRCAE  240
DMSILITTYE GNHNHPLPMS ATAMASTTSA AASMLLSASS SSTPTTAASA AAANLNGINY  300
YINNSDPTTN NNPSPFSSSS RSLFYFQTNN NNTYMNSPYS PSPTCPTITL DLASNNNDSS  360
NNTPNNILHS SLPSRFSSLP RFPPTSLNFA STEPPFWGPT TTTNNGILNY GIGNTSTSTS  420
TTTTQLPYYS TGRLTSAVGP TSSEVAAATK AITADPSFQS ALAAALTTII GNNGKSNNYS  480
GNNNSSGGGM EWRSSVGGQA GAHLFPVASS SGLGRAADSV GKDKSNRAAA TSSGRNDQPL  540
MFLPSSSSRS ASASPPDNKD C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20184258174WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100236150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.13e-41WRKY DNA-binding protein 61