PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 562aa MW: 60081.7 Da PI: 7.4005 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.1e-30 | 197 | 256 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt +Cpv+k+v+r+aed +++++tYeg+Hnh+ Lus10023615 197 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGpTCPVRKQVQRCAEDMSILITTYEGNHNHP 256 58***************************88****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-32 | 182 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-27 | 190 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.231 | 192 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-36 | 197 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 198 | 256 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MGEVMEENRR LKLYLEQIMK EYKTLESKFH DIVQQQEEEH QQSKKSTDSV RKKSPLLMLE 60 DGDGDDDDEQ GDEQLQVSLS LGRSPSRELK KMNSNNLEEV KGSSSSSLSL TLDYSRFEGA 120 SNINGVGAKR MSPLSSSFED RDVKEDATKP SPSNTNANTS KRSSEDDEVS QQQQQQQNPA 180 AKKARVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVGPTCP VRKQVQRCAE 240 DMSILITTYE GNHNHPLPMS ATAMASTTSA AASMLLSASS SSTPTTAASA AAANLNGINY 300 YINNSDPTTN NNPSPFSSSS RSLFYFQTNN NNTYMNSPYS PSPTCPTITL DLASNNNDSS 360 NNTPNNILHS SLPSRFSSLP RFPPTSLNFA STEPPFWGPT TTTNNGILNY GIGNTSTSTS 420 TTTTQLPYYS TGRLTSAVGP TSSEVAAATK AITADPSFQS ALAAALTTII GNNGKSNNYS 480 GNNNSSGGGM EWRSSVGGQA GAHLFPVASS SGLGRAADSV GKDKSNRAAA TSSGRNDQPL 540 MFLPSSSSRS ASASPPDNKD C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 184 | 258 | 1 | 74 | WRKY transcription factor 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023615 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10023615 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 3e-41 | WRKY DNA-binding protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Lus10023615 |