PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9519.73 Da PI: 5.845 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 12 | 55 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ E +l+ +a +++ ++ +W +a+ +g g++++++k+ + Lus10023564 12 WTARENKLFEEALALHDKDtpdRWINVANAVGSGKSAEEVKLQY 55 *****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8E-5 | 8 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.16E-11 | 11 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-6 | 12 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.32E-5 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSSNNGLACT LWTARENKLF EEALALHDKD TPDRWINVAN AVGSGKSAEE VKLQYDILVA 60 DVARIESGRV PIPEYRTGTP KLASRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-25 | 1 | 77 | 1 | 75 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023564 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310812.1 | 3e-30 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 3e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A482DHU1 | 1e-29 | A0A482DHU1_9ASPA; RADIALIS 1 (Fragment) | ||||
STRING | Lus10023564 | 6e-58 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-30 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Lus10023564 |