PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023540

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 282aa MW: 29936.5 Da PI: 9.4286

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023540	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F++ L H +H Lus10023540 89 YECRTCNRTFPSFQALGGHRASH 111 99**********99999998887 PP
2	zf-C2H2	16.2	3e-05	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L+ H+r+H Lus10023540 162 HECGQCGAEFNSGQALRGHMRRH 184 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.45E-8	88	111	No hit	No description
Pfam	PF13912	2.9E-12	88	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.09	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.429	89	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.45E-8	157	184	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-4	161	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-11	161	186	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0044	162	184	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	162	189	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAKPLPVLPP PVVLTVLLGG STEEEEDMAN CLILLAQGSS SFVTNNHVNA AISSAVNNNN 60 IASGKFTSRK FMETGSGVEG GGKVGYYVYE CRTCNRTFPS FQALGGHRAS HKKPKNLLVT 120 NNTLLATAPS YNEETNFLQL NSGGGLTASN HKGNNSNYNR VHECGQCGAE FNSGQALRGH 180 MRRHRAPPTT IATNLSLLTS NNGGLSSYKN TAANNNKVGG TSGEERLVLG KRGRSLRTTS 240 LDLDLNQLPA PEEKQPITNL PPANNKPTTV FPSQALVGCH Y*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023540

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10023540	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-33	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10023540