PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 412aa MW: 46184.2 Da PI: 7.0674 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.6e-50 | 46 | 173 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv++yL++kv +k++++ ++i+evdiy+ ePw+L +++k++++ewyf+ d+ky +g r nrat +gyWkatgkd+ + + + Lus10023537 46 LAPGFRFHPTDEELVSYYLRRKVGSKPVRF-NAIAEVDIYRNEPWELAdkSRLKTRDQEWYFYGALDRKYGNGGRMNRATGTGYWKATGKDRGIRR-D 141 579************************999.89**************75348899999*************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+ +kktLvf++grap g++t+Wvmheyrl Lus10023537 142 NQLIAMKKTLVFHNGRAPGGHRTNWVMHEYRL 173 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-58 | 41 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.434 | 46 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 48 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MAPQSEIPNA LPLPPAAAAA STATFALAPA APPRKTQPAA SSTTALAPGF RFHPTDEELV 60 SYYLRRKVGS KPVRFNAIAE VDIYRNEPWE LADKSRLKTR DQEWYFYGAL DRKYGNGGRM 120 NRATGTGYWK ATGKDRGIRR DNQLIAMKKT LVFHNGRAPG GHRTNWVMHE YRLVDEELER 180 IGNLQGDSFV LCRVFHKNNI GPPNGNRYAP FMEEEWDDDN KPVLVPGEDV ADERVACSEA 240 YAEMNRVEQD KLSISKEPFD VNEVPKVTRD LLSLCKNETV EEMEELDAPM TSAHPPQPQQ 300 TRSHRRPPPP PPPTTAISAL LEFSLMEPKE RTPSPKKPTS SSSASLESLV PSGCMKLIND 360 LQSEVHKVSV DRETLKLELM RANAMANILQ SRIDHLNEEN KDLKRNLREG H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 45 | 199 | 19 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023537 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081001.1 | 1e-166 | NAC domain-containing protein 82 isoform X2 | ||||
Swissprot | Q9SQX9 | 1e-109 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | R4NFV5 | 1e-165 | R4NFV5_JATCU; NAC transcription factor 043 | ||||
STRING | Lus10023537 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-109 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Lus10023537 |
Publications ? help Back to Top | |||
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