PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023519
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 604aa    MW: 66867.7 Da    PI: 7.3679
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023519genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24107208199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ 
  Lus10023519 107 FAKQLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGD 200
                  89****************************985444444..8999*********************************************3..47888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Lus10023519 201 LCVGIRRA 208
                  8****997 PP
2Auxin_resp101.21.3e-33255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++ +FevvY+P+a+t+e+ v+++ v++a+++++ +G Rfkm fetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Lus10023519 255 AATLAAKGRPFEVVYYPSAGTPEYWVRASAVRAAMQMQWYPGIRFKMPFETEDSSRISCfMGTISSVQVADPIHWPNSPWRLLQ 338
                  688999*****************************************************9**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-3898213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-30102210IPR015300DNA-binding pseudobarrel domain
CDDcd100174.15E-22106207No hitNo description
SMARTSM010192.9E-21107209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338107209IPR003340B3 DNA binding domain
PfamPF023622.5E-22107208IPR003340B3 DNA binding domain
PfamPF065077.7E-29255338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MKCLDSQFWH ACAGGMVQIP PVNSKVYYFP QGHAEHAQLT ADFAPPSCQI PSMVPCKVSA  60
INYMADPETD EVFAKISLIP LISGSRDDNS NDDGLFESSQ EEKTASFAKQ LTQSDANNGG  120
GFSVPRYCAE TIFPRLDYNA EPPVQTILAK DVHGQTWKFR HIYRGTPRRH LLTTGWSNFV  180
NQKKLVAGDS IVFLRADNGD LCVGIRRARR NECAPSGWNS YGFMREDYEC RKNVVSNGGD  240
VTMKAKIRAE SVVEAATLAA KGRPFEVVYY PSAGTPEYWV RASAVRAAMQ MQWYPGIRFK  300
MPFETEDSSR ISCFMGTISS VQVADPIHWP NSPWRLLQVE WDEPELLHNV KRVNPWLVEL  360
VSSMPAIHIT PFSPPRKKLR FPQESDFSLM SQLPLPPFTG NSLRPNNRPL CCVPNTNIPA  420
GIQGARHTHH FDLLPSSDLH FNKLQQQTGQ LLPFGFAPKF NIPMNNFAAK TNCDENVSCL  480
LTIGGSSPKE SSETKKMPHI FLFGQLIVPD HHTSSGSCSS ESWNGNSTSV GNAEKIMMTN  540
LSEGSSSSVY QNGPLENSSD AGSPRYKHLP INDGAGRTLD LSMMGSYKEL NGKLADMLGM  600
ERS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-80435951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651479.10.0auxin response factor 18-like
RefseqXP_021651480.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2C9VK330.0A0A2C9VK33_MANES; Auxin response factor
STRINGLus100235190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]