PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023484

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 169aa MW: 18068.2 Da PI: 7.5054

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023484	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.1	1.7e-55	25	118	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+srimkk lPan+ki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yre + Lus10023484 25 VREQDRFLPIANISRIMKKGLPANGKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKAYLARYREGD 118 69*****************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.2E-53	22	133	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-39	28	127	IPR009072	Histone-fold
Pfam	PF00808	4.7E-28	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-21	59	77	No hit	No description
PROSITE pattern	PS00685	0	62	78	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-21	78	96	No hit	No description
PRINTS	PR00615	3.3E-21	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAENPGSPAG GSHDSGGEHS PHSGVREQDR FLPIANISRI MKKGLPANGK IAKEAKDTVQ 60 ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKAY LARYREGDAK 120 GSARGEGSAA KRDPMGGNGM PAQNTQMTLN MVCAGTRAAY GSSFHAWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-46	25	116	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-46	25	116	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023484

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU830845	0.0	EU830845.1 Linum usitatissimum clone LU0032C11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073728.1	2e-89	nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_020535556.1	1e-89	nuclear transcription factor Y subunit B-1 isoform X4
Swissprot	Q8VYK4	8e-70	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A067LFV2	2e-87	A0A067LFV2_JATCU; Uncharacterized protein
STRING	Lus10023484	1e-124	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-72	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Lus10023484

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]