PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 20661.5 Da PI: 8.8598 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Lus10023433 44 FECKTCNRQFSSFQALGGHRASH 66 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00046 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs L H+r+H Lus10023433 98 HQCSVCGLEFSVGQALGGHMRRH 120 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.46E-8 | 42 | 66 | No hit | No description |
Pfam | PF13912 | 1.3E-11 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.556 | 44 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.46E-8 | 93 | 120 | No hit | No description |
Pfam | PF13912 | 7.0E-10 | 97 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MNMQETIGEI LNLTVANCLV LLSRQPRYDI VVSERGSSSP SRVFECKTCN RQFSSFQALG 60 GHRASHKKHP LPTGCSEGSL KVGGHLEKQV LPTMPKAHQC SVCGLEFSVG QALGGHMRRH 120 RAASDLPVVA TTVTSGGGSN GGSEESSENP TLRMKRARVL SLDLNLTPYE NDVKLLKLGT 180 NHNASMVDFF N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023433 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027131.1 | 3e-48 | PREDICTED: zinc finger protein ZAT11-like | ||||
Refseq | XP_020537954.1 | 3e-48 | zinc finger protein ZAT12-like | ||||
Swissprot | Q681X4 | 4e-29 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A067KDD3 | 8e-47 | A0A067KDD3_JATCU; Uncharacterized protein | ||||
STRING | Lus10023433 | 1e-139 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-32 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10023433 |
Publications ? help Back to Top | |||
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