PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023404

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 786aa MW: 87997.7 Da PI: 6.6089

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023404	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	378.8	6.8e-116	411	782	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d ++a+ lL++++++a p+gd mqRla+ f+ +L+ar+a+s++++ykal +++ts +++l+a++lf ++P+ k+s++ Lus10023404 411 LRTLLTLCAQAVAADDRRNANVLLKQIRDNAPPTGDGMQRLASIFADGLEARMAGSGTKIYKALITKATS---AADVLKAYQLFLAACPYKKLSNFFS 505 5789************************************************************9999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ +++++r+Hi+Df+i +G+QWp+L+q L+s p+gpp+lRiTgv+ p++g +e++eetg+rLa++A++++vpfefn+ +a++++++++e+L Lus10023404 506 NKTIMNLAQRAKRLHIVDFGILYGFQWPCLIQRLSSMPGGPPKLRITGVDLPNPGfrPAERVEETGRRLANYAKTFNVPFEFNA-LAQKWDTIKIEDL 602 **************************************************9*************************.6******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn++++l +llde+v ++ +r+ vL+lv++++P+v+++ + +++++ F +rf eal ++s++fd+le+++pr+ er+ +Er ++g+ Lus10023404 603 KIEKDEVLVVNCMYRLRNLLDETVVVDCPRNIVLNLVRRMNPEVFILGIVNGSYSAPFFITRFREALFHFSTVFDMLETTVPRDMPERMLIERDIFGW 700 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+acegaer er et+++ + r ++aGF+++pl+ ++ ++ak +++ +++ + ++e+ ++l++gWk+r ++++S+W+ Lus10023404 701 EAMNVIACEGAERLERPETYKQCQVRAQRAGFSQLPLNREILTTAKEKVKENYNKDFVIDEDGEWLLQGWKGRIVYALSSWK 782 *************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.613	385	762	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-113	411	782	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MRSETEQLFH ALPVTFNPLS FSKYFPPPPP PPQHSPLLQD IENSMMDQSL GGLFDSVSGL 60 KLSHEALSAL TTRKLISGLK SDDTLINKNF VPRNDPSISN GQATVPSNPN QAVQSSRDDF 120 DFNDVVLKYI DDMLMEENME EKACMFQESS AALQAAEKSL YELIGERYPP LPVTEPIQPH 180 PDQYHGSSDD QHDSNRRVCS SNSSCISSGS SLIDCGRSYD VDECRSSTRN ASYSVSRTAQ 240 SSDSPVSTII IPDMFTESES ADQFRRGFEE ASKFIPRASL LFDMESTGIS LKDLRKQNKG 300 EEIEVVNNKL QNSFCFEQAR GKKNPHPEYL NLDGAARSSK QSAVSSESTV SSEDFDRILL 360 NCAQDPESTL RAAMESEKNR TAMQNKLTKS SNGGKARGKR QGGTKKNVVD LRTLLTLCAQ 420 AVAADDRRNA NVLLKQIRDN APPTGDGMQR LASIFADGLE ARMAGSGTKI YKALITKATS 480 AADVLKAYQL FLAACPYKKL SNFFSNKTIM NLAQRAKRLH IVDFGILYGF QWPCLIQRLS 540 SMPGGPPKLR ITGVDLPNPG FRPAERVEET GRRLANYAKT FNVPFEFNAL AQKWDTIKIE 600 DLKIEKDEVL VVNCMYRLRN LLDETVVVDC PRNIVLNLVR RMNPEVFILG IVNGSYSAPF 660 FITRFREALF HFSTVFDMLE TTVPRDMPER MLIERDIFGW EAMNVIACEG AERLERPETY 720 KQCQVRAQRA GFSQLPLNRE ILTTAKEKVK ENYNKDFVID EDGEWLLQGW KGRIVYALSS 780 WKASP*

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MRSETEQLFH ALPVTFNPLS FSKYFPPPPP PPQHSPLLQD IENSMMDQSL GGLFDSVSGL  60
KLSHEALSAL TTRKLISGLK SDDTLINKNF VPRNDPSISN GQATVPSNPN QAVQSSRDDF  120
DFNDVVLKYI DDMLMEENME EKACMFQESS AALQAAEKSL YELIGERYPP LPVTEPIQPH  180
PDQYHGSSDD QHDSNRRVCS SNSSCISSGS SLIDCGRSYD VDECRSSTRN ASYSVSRTAQ  240
SSDSPVSTII IPDMFTESES ADQFRRGFEE ASKFIPRASL LFDMESTGIS LKDLRKQNKG  300
EEIEVVNNKL QNSFCFEQAR GKKNPHPEYL NLDGAARSSK QSAVSSESTV SSEDFDRILL  360
NCAQDPESTL RAAMESEKNR TAMQNKLTKS SNGGKARGKR QGGTKKNVVD LRTLLTLCAQ  420
AVAADDRRNA NVLLKQIRDN APPTGDGMQR LASIFADGLE ARMAGSGTKI YKALITKATS  480
AADVLKAYQL FLAACPYKKL SNFFSNKTIM NLAQRAKRLH IVDFGILYGF QWPCLIQRLS  540
SMPGGPPKLR ITGVDLPNPG FRPAERVEET GRRLANYAKT FNVPFEFNAL AQKWDTIKIE  600
DLKIEKDEVL VVNCMYRLRN LLDETVVVDC PRNIVLNLVR RMNPEVFILG IVNGSYSAPF  660
FITRFREALF HFSTVFDMLE TTVPRDMPER MLIERDIFGW EAMNVIACEG AERLERPETY  720
KQCQVRAQRA GFSQLPLNRE ILTTAKEKVK ENYNKDFVID EDGEWLLQGW KGRIVYALSS  780
WKASP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-49	411	782	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023404

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021653736.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2K1ZCG1	0.0	A0A2K1ZCG1_POPTR; Uncharacterized protein
STRING	Lus10023404	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Lus10023404

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]