PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023345

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

S1Fa-like

Protein Properties

Length: 1444aa MW: 161712 Da PI: 9.463

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023345	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	61.6	1.5e-19	1381	1443	13	70
S1FA 13 PGlivllvvgglllvflvgnyilyvyaqknlPPrk.....kkPvskkklkreklkqGvavPGe 70 G++v+ +v glll+f+vgny+ly ya ++ k kk vskkk+kre++kqG+ vPG+ Lus10023345 1381 QGMVVFGIVVGLLLLFVVGNYLLYSYATRQSKNSKkmmmvKKAVSKKKMKRERIKQGIFVPGD 1443 69***********************887766552555579*****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08637	3.2E-68	307	581	IPR013946	Nuclear control of ATP synthase 2
Pfam	PF09786	1.6E-208	626	1281	IPR019176	Cytochrome B561-related
Pfam	PF04689	2.8E-17	1381	1443	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1444 aa Download sequence Send to blast
MEENGAGEAE VHGVKHLVSF YSNQVWNRLT AFFPSDSNFL GRIASIRRQT VRRHDLFLPL 60 PLSSHILDSY LMKPGSSRVY DVLQDILERS YNNLHSIQKN LLFWECRAEG SEREKLYFML 120 LERGPRAFID GTVQLVRETL KDGFSTQQLA LSASAFINER LVVLRTLRCA IAAFLAEVYR 180 EVDKRGKDLT EDPDKAFPSL LFTIDNLFST LEASIGHLHA MREAGSSVDG SYSLPLLFEK 240 LPEVNQDGSE WTDCEITDAI GVVYKNLEKL DSYLSLVVVK HQKPRKLTQH WIRYTCGAIG 300 FSVCSIWVLR HSRLMGSSDI DNWIHEARDS IASFYEDHVE QPILSIRDEL FDTFRKRHKG 360 VMEIEEVQLT AGSLHRMLLA FSEQTQGGSF PENASDQKML ELVMGRYEKE LEHPIHNLVK 420 GELARALLIQ VQKLKLDIET AMLELDQILK ANEINFAILA ALPAFALSVV LLMLLRAWIK 480 QDTRAEGRGR IARRHRRLLL AEVEKSIMQY QIYLDHGLGT ESQSMFGMVL YSLNRLCLAV 540 ERHAKATGEW RLLRQDIMEL GKPGLKTEYK LRVTLRMERA YECLLPSTTR IFQLRSGERS 600 CQFSFPLQHS ATMEGRSSPP ASKSAKFAVY QNPSLTAALA ASSLQPSKST FLYIVLLSVA 660 SALALFSIVS RENGFIEMVE VSFFSRRAAY IFAKVVEGVV GVLFVGCLFG LLRVISWKRV 720 GNVASVPMIT SPETKDLPKL TSRQLGFLGV RPKVEAIPVE YSKKPPKSKP TPASDLLVPI 780 HQQTTGSNLR SRVTSDKSSL GSGNKMSSFG SPSKSQSSPS SMYLVPRISS PLPSGQSSSG 840 MDSAVSTPWS SKRAFSAKEI VTEEELEKFL ADVDAKFTES AGKHTTPPPT VRGFGILSPG 900 NVPSPTNTSG TTRSTPLRPV RMSPGSQKFA TPPKKGEGEL PPPMSMEEAI EAFKHLGIYP 960 QIEQWRDRLR QWFSSVLLGL LINKIETSHI QVMQTAAELG IAITVNQVGN SATSDTPATL 1020 SSIDGKEWQS AFTFDEDGRL HQLRATLVHA IDASAPKFNQ FNKQQSPQPN PMAPVMQKCL 1080 DAITEHQKLR ALMKGDWGKG LLPYSNVRED HMVQRIRELA EGTCVKNFEY IRTGEAYDTK 1140 NKKQTLDLPT DSHLLLYLFC AFLEHPKWML HVDPTSHAGA QSSKNPLFLG VLPPKERFPE 1200 KYVAVVSAVP STLHPGSCIL VMGKQSPPVF ALYWDKMQQF SLQGRTALWD SIILMCHRIK 1260 FGYGSVVRGM HLGSSALNIL PEKATLQLVI AEKLHENSRI SGDKPEGKSS IDLEEDAIKS 1320 KQGSHCCFYP IMDLDEFVSW TPEKPKKTYF IRNGRMGRDK NGKMIIRENE DDVQSNSSNK 1380 QGMVVFGIVV GLLLLFVVGN YLLYSYATRQ SKNSKKMMMV KKAVSKKKMK RERIKQGIFV 1440 PGD*

Sequence ? help Back to Top

Protein Sequence Length: 1444 aa Download sequence Send to blast

MEENGAGEAE VHGVKHLVSF YSNQVWNRLT AFFPSDSNFL GRIASIRRQT VRRHDLFLPL  60
PLSSHILDSY LMKPGSSRVY DVLQDILERS YNNLHSIQKN LLFWECRAEG SEREKLYFML  120
LERGPRAFID GTVQLVRETL KDGFSTQQLA LSASAFINER LVVLRTLRCA IAAFLAEVYR  180
EVDKRGKDLT EDPDKAFPSL LFTIDNLFST LEASIGHLHA MREAGSSVDG SYSLPLLFEK  240
LPEVNQDGSE WTDCEITDAI GVVYKNLEKL DSYLSLVVVK HQKPRKLTQH WIRYTCGAIG  300
FSVCSIWVLR HSRLMGSSDI DNWIHEARDS IASFYEDHVE QPILSIRDEL FDTFRKRHKG  360
VMEIEEVQLT AGSLHRMLLA FSEQTQGGSF PENASDQKML ELVMGRYEKE LEHPIHNLVK  420
GELARALLIQ VQKLKLDIET AMLELDQILK ANEINFAILA ALPAFALSVV LLMLLRAWIK  480
QDTRAEGRGR IARRHRRLLL AEVEKSIMQY QIYLDHGLGT ESQSMFGMVL YSLNRLCLAV  540
ERHAKATGEW RLLRQDIMEL GKPGLKTEYK LRVTLRMERA YECLLPSTTR IFQLRSGERS  600
CQFSFPLQHS ATMEGRSSPP ASKSAKFAVY QNPSLTAALA ASSLQPSKST FLYIVLLSVA  660
SALALFSIVS RENGFIEMVE VSFFSRRAAY IFAKVVEGVV GVLFVGCLFG LLRVISWKRV  720
GNVASVPMIT SPETKDLPKL TSRQLGFLGV RPKVEAIPVE YSKKPPKSKP TPASDLLVPI  780
HQQTTGSNLR SRVTSDKSSL GSGNKMSSFG SPSKSQSSPS SMYLVPRISS PLPSGQSSSG  840
MDSAVSTPWS SKRAFSAKEI VTEEELEKFL ADVDAKFTES AGKHTTPPPT VRGFGILSPG  900
NVPSPTNTSG TTRSTPLRPV RMSPGSQKFA TPPKKGEGEL PPPMSMEEAI EAFKHLGIYP  960
QIEQWRDRLR QWFSSVLLGL LINKIETSHI QVMQTAAELG IAITVNQVGN SATSDTPATL  1020
SSIDGKEWQS AFTFDEDGRL HQLRATLVHA IDASAPKFNQ FNKQQSPQPN PMAPVMQKCL  1080
DAITEHQKLR ALMKGDWGKG LLPYSNVRED HMVQRIRELA EGTCVKNFEY IRTGEAYDTK  1140
NKKQTLDLPT DSHLLLYLFC AFLEHPKWML HVDPTSHAGA QSSKNPLFLG VLPPKERFPE  1200
KYVAVVSAVP STLHPGSCIL VMGKQSPPVF ALYWDKMQQF SLQGRTALWD SIILMCHRIK  1260
FGYGSVVRGM HLGSSALNIL PEKATLQLVI AEKLHENSRI SGDKPEGKSS IDLEEDAIKS  1320
KQGSHCCFYP IMDLDEFVSW TPEKPKKTYF IRNGRMGRDK NGKMIIRENE DDVQSNSSNK  1380
QGMVVFGIVV GLLLLFVVGN YLLYSYATRQ SKNSKKMMMV KKAVSKKKMK RERIKQGIFV  1440
PGD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023345

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10023345	0.0	(Linum usitatissimum)

Link Out ? help Back to Top
Phytozome	Lus10023345