PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023297
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 443aa    MW: 47718.1 Da    PI: 7.4536
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023297genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.1e-361072712134
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................ssssa 70 
                   g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                             +++sa
  Lus10023297 107 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAISELPSLnasfpdipkqydndekrstnpaavsggggGFDSA 204
                  689*************************************************************9888888888877777753333333333322222 PP

          TCP  71 seceaesssssasnsssg.....kaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                   + e e+ ++++     +      + +++a+s +s++s+ s l+l++     sr kar rare+ + k + k+
  Lus10023297 205 -DLELEEPNQNQ-----NhlqqqLSLSKSACSCNSETSKGSGLSLSRsdvrVSRVKARDRAREKAAAKEKEKD 271
                  .22222222222.....12333344555555555566666566666643457778888888887766666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-41108269IPR005333Transcription factor, TCP
PROSITE profilePS5136931.391109167IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.942249268IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEVEDLHQTQ PPSKFSRISN GGRSDNSKIG TTNGVLGVGG DNNHHHHLRQ FQADTEEEDG  60
GGEIKMSLCN TPTGAGPIVA AEVPDGATGN RLRGWHHSRI IRVSRASGGK DRHSKVWTSK  120
GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA SDAISELPSL NASFPDIPKQ  180
YDNDEKRSTN PAAVSGGGGG FDSADLELEE PNQNQNHLQQ QLSLSKSACS CNSETSKGSG  240
LSLSRSDVRV SRVKARDRAR EKAAAKEKEK DSNMPQGIPQ FNLSAGGENA HNHNHNHNHH  300
HHQEQQQQLQ LQHFPFVSDY LMPAAATSTQ GGQHNQGVDY NLNFTISSSG LAGFNRGTLQ  360
SNSSPSPSPS LVLPQQLQQR FPNSHIDGSS SATHLPFFIG GGAAGAPPPL ENHNHLFPSG  420
LQLCYGDGSS SRHSDQKGKG GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-24114168155Putative transcription factor PCF6
5zkt_B3e-24114168155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023297
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315816.13e-95transcription factor TCP2-like
RefseqXP_008371621.23e-95transcription factor TCP2-like isoform X1
RefseqXP_008371623.23e-95transcription factor TCP2-like isoform X1
RefseqXP_008371624.23e-95transcription factor TCP2-like isoform X1
TrEMBLD5MRQ06e-94D5MRQ0_MALDO; MdTCP2A protein
STRINGLus100232970.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2