PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023208

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 336aa MW: 39121.4 Da PI: 7.248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023208	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.2	8.2e-50	25	150	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eel+++yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ Lus10023208 25 MPGFRFHPTEEELIQFYLRRKVEGKPFNV-ELITFLDLYRYDPWHLPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSRS 121 79*************************.89***********888889***************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg++++W+m+eyrl Lus10023208 122 IGLKKTLVFYSGKAPKGVRSSWIMNEYRL 150 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.372	24	171	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-56	24	171	IPR003441	NAC domain
Pfam	PF02365	8.4E-25	26	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MKENNGDREV VDEEEEDEHD HDMVMPGFRF HPTEEELIQF YLRRKVEGKP FNVELITFLD 60 LYRYDPWHLP AMAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA DRMIRGENSR 120 SIGLKKTLVF YSGKAPKGVR SSWIMNEYRL PHHDTQRYQK TEISLCRVYK RPGVEDHRGV 180 PSTSTLPRSI PSSFRARHHQ QHPGASSAVG LISNQLPTLT HHPLQLPPQQ QQVLDHAQVE 240 EDQLMLLNGT STNNNNNLDD LHRLVNYQQN HDHLSYHPHH QLHMWEWDRF GGGGAPPPPP 300 RPPQHDHQNH DLQGGHRLAG DHHHYETNNQ TNLFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-55	14	171	7	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-55	14	171	7	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-55	14	171	7	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-55	14	171	7	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	14	171	10	168	NAC domain-containing protein 19
3swm_B	1e-54	14	171	10	168	NAC domain-containing protein 19
3swm_C	1e-54	14	171	10	168	NAC domain-containing protein 19
3swm_D	1e-54	14	171	10	168	NAC domain-containing protein 19
3swp_A	1e-54	14	171	10	168	NAC domain-containing protein 19
3swp_B	1e-54	14	171	10	168	NAC domain-containing protein 19
3swp_C	1e-54	14	171	10	168	NAC domain-containing protein 19
3swp_D	1e-54	14	171	10	168	NAC domain-containing protein 19
4dul_A	9e-55	14	171	7	165	NAC domain-containing protein 19
4dul_B	9e-55	14	171	7	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023208

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021640395.1	1e-115	NAC domain-containing protein 35-like isoform X2
Swissprot	Q9ZVP8	1e-107	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	R4N5L6	1e-113	R4N5L6_JATCU; NAC transcription factor 036
STRING	Lus10023208	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-109	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Lus10023208

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]