PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023179
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 355aa    MW: 40721.9 Da    PI: 5.3416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023179genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.38.8e-51111381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF Ptdeel+v+yLk+++++++l++ ++i+e+d+yk++Pw+Lpkk+  +++ewyfF++rd+ky++g r+nra+ sgyWkatg+dk++ls+ + 
  Lus10023179  11 LPPGFRFYPTDEELIVQYLKNRIRSTPLPA-SIIAEIDLYKFDPWELPKKALFGDDEWYFFTPRDRKYPNGARPNRAAGSGYWKATGTDKPILSSnGM 107
                  79****************************.89***************8888899**************************************99556 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vg+kk Lvfykgr pkg ktdW+m eyrl
  Lus10023179 108 ASVGVKKALVFYKGRPPKGIKTDWIMYEYRL 138
                  67***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-628164IPR003441NAC domain
PROSITE profilePS5100560.26911164IPR003441NAC domain
PfamPF023654.0E-2512138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEPQSSSDIH LPPGFRFYPT DEELIVQYLK NRIRSTPLPA SIIAEIDLYK FDPWELPKKA  60
LFGDDEWYFF TPRDRKYPNG ARPNRAAGSG YWKATGTDKP ILSSNGMASV GVKKALVFYK  120
GRPPKGIKTD WIMYEYRLPD TISNPRQKGS MRLDDWVLCR VKQKCSNPKS LWEDRSAPIQ  180
ELPGTFPKQN EKLQMNVNLH KPENVAPTFE MIKNYDSKTA NINLNDDMVK NYFTNPNDDM  240
VRNYLYKECP MLPYIFASQD FACAKPASSI NFQGSDKSST SGYEEDSDDK NLHFSSVSSL  300
DNFFNPLKRK DVERDQQDST FVQSKKPKTG DLEEDIVLSM CDDTFDINFC VDEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-71716913170NO APICAL MERISTEM PROTEIN
1ut4_B5e-71716913170NO APICAL MERISTEM PROTEIN
1ut7_A5e-71716913170NO APICAL MERISTEM PROTEIN
1ut7_B5e-71716913170NO APICAL MERISTEM PROTEIN
3swm_A6e-71716916173NAC domain-containing protein 19
3swm_B6e-71716916173NAC domain-containing protein 19
3swm_C6e-71716916173NAC domain-containing protein 19
3swm_D6e-71716916173NAC domain-containing protein 19
3swp_A6e-71716916173NAC domain-containing protein 19
3swp_B6e-71716916173NAC domain-containing protein 19
3swp_C6e-71716916173NAC domain-containing protein 19
3swp_D6e-71716916173NAC domain-containing protein 19
4dul_A5e-71716913170NAC domain-containing protein 19
4dul_B5e-71716913170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289648.11e-127NAC transcription factor 25-like isoform X1
TrEMBLA0A061ET241e-123A0A061ET24_THECC; NAC domain protein, IPR003441, putative
STRINGLus100231790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-81NAC domain containing protein 25