PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023138
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 350aa    MW: 38989.1 Da    PI: 6.3722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023138genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.2e-07145166223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C+ Cgk F+r  nL+ H+r H
  Lus10023138 145 FCSVCGKGFKRDANLRMHMRAH 166
                  6*******************99 PP
2zf-C2H211.20.0011264280521
                  TTTEEESSHHHHHHHHH CS
      zf-C2H2   5 dCgksFsrksnLkrHir 21 
                   Cg+sFsrk+ L  H+ 
  Lus10023138 264 TCGTSFSRKDKLFGHMA 280
                  7**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.87E-6141167No hitNo description
Gene3DG3DSA:3.30.160.605.9E-6143166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967144171IPR007087Zinc finger, C2H2
PfamPF128740.0048145164No hitNo description
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SMARTSM0035525195228IPR015880Zinc finger, C2H2-like
SMARTSM0035525233255IPR015880Zinc finger, C2H2-like
SMARTSM00355220261285IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSFPVPAGSS DLQVPLMNLS TVSKRLDSLH QLLSESVKTN TVISQIQMDM VSSEISSAIQ  60
NTIINGAALL ACSSQSTPDL PPPKISTELK PIEKYREKEP SPSPPPPPPQ SSLSQMKNES  120
DCDLDGGDDV IELDAVELLA EHVHFCSVCG KGFKRDANLR MHMRAHGNQF KTAEALAKPK  180
DDDNLEEKKK KKARFSCPYE GCNRNREHSK FKALKSVICV RNHFKRSHCP KTYTCSRCNK  240
KNFSVEADLR SHFKHCGELR WKCTCGTSFS RKDKLFGHMA LFEGHMPAAR EEEGGGEEMK  300
MMVQQEEEDG NGDEGLLFDD GFGSMEDVLE YPASTDWQRE MSLFCGFGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4615131e-136GQ461513.1 Linum usitatissimum clone LU0CT0E26 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663814.11e-131protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ943I63e-76STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2C9UW631e-126A0A2C9UW63_MANES; Uncharacterized protein
STRINGLus100231380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-72C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]