PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023099
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 363aa    MW: 40052.4 Da    PI: 5.0898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023099genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.2e-29153213259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYGqK++ g+++prsYYrCt++   +C++ k+v+rs+edp+++e+tY+g+H+++
  Lus10023099 153 DDGFSWRKYGQKDILGAKYPRSYYRCTYRstqNCWAIKQVQRSDEDPTIFEVTYRGTHTCS 213
                  8**************************99899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.895147210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-28148213IPR003657WRKY domain
SuperFamilySSF1182901.16E-25151214IPR003657WRKY domain
SMARTSM007741.5E-37152214IPR003657WRKY domain
PfamPF031061.3E-26153212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MERSELSWEQ RTVVNELIQG MEVAKQLSCH LKGASAVEVA DSLVQRILSS YEKALFILNW  60
KNNGSSSSSS SMEQTLQAVV TGTTAAAVVA ATGSAGVPGS PLSRNGSPRS EDFDGSKDSY  120
QVPIDASKKR KAMPRWTDQV RMSSDNGLEG PIDDGFSWRK YGQKDILGAK YPRSYYRCTY  180
RSTQNCWAIK QVQRSDEDPT IFEVTYRGTH TCSYGQQTVP SPQKEEQQHK HNISRHQIPL  240
PPPPPEEALQ NLQKGLKVDT QDLDNREAIP FTFPSTYECQ NSNYSPSFLS PATPEPNYYH  300
QLSPLVNSFG GGAQSLQLSD SELAEIISAQ TSATSSPILD LDFPLESFDL VPNFSYPPGF  360
FT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19152212868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509941.11e-137probable WRKY transcription factor 41
TrEMBLB9RCQ71e-135B9RCQ7_RICCO; Uncharacterized protein
STRINGLus100230990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-69WRKY family protein