PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023058
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 668aa    MW: 74397.9 Da    PI: 7.1885
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023058genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-24117217198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++ 
  Lus10023058 117 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGETGD 210
                  99****************************9643..445569************************************************..348999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Lus10023058 211 LRVGVRR 217
                  9****98 PP
2Auxin_resp96.73.4e-32243322183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t+++F v+Y+Pr+  s+F++ ++++++a+ +k++vG Rfkm+fe+eds+err+sGt+vgv d++p  W +SkWr+Lk
  Lus10023058 243 ASHAVGTQTMFVVYYKPRT--SQFIIGLNRYLEAVGNKFAVGKRFKMRFEGEDSPERRFSGTIVGVDDFSP-YWAESKWRCLK 322
                  6899**************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-41107246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-41110232IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-20115217No hitNo description
SMARTSM010196.4E-23117219IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998117219IPR003340B3 DNA binding domain
PfamPF023625.2E-22117217IPR003340B3 DNA binding domain
PfamPF065071.5E-29243322IPR010525Auxin response factor
PROSITE profilePS5174521.436546627IPR000270PB1 domain
SuperFamilySSF542775.89E-11552622No hitNo description
PfamPF023095.4E-7592629IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAANQGGGKD DLYTELWKLC AGPVVEVPKS NERVYYFPQG HMEQLEASTN QELNQRAPLF  60
NLPSKILCRV INILLLAEPE TDEVYAQITL IPELDQSEPT SPDLCPTETP RPSVHSFCKV  120
LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ QTPTQELVAK DLHGYEWRFK HIFRGQPRRH  180
LLTTGWSTFV TSKRLVAGDS FVFLRGETGD LRVGVRRVAR QQSSMPTSVI SSQSMHLGVL  240
ATASHAVGTQ TMFVVYYKPR TSQFIIGLNR YLEAVGNKFA VGKRFKMRFE GEDSPERRFS  300
GTIVGVDDFS PYWAESKWRC LKVQWDEPAS IPRPDKVSPW EIEPFVASVQ ANLPQPAPMK  360
NKRPRPPNEI PALDLSSTAS TWNSGLTQTH ELTRISVTAE GRRNENVMMW QHKQADIISH  420
GSSISRTQTD AGWLSPHMNV NQHNFQDTIE DTKSVSNWPV TNFSSPRAAK PKSEVASSYR  480
LFGIELMNSP MSAPMNEKTL SSGTTEVQVN STISAADPDQ KPDSPKEKKT DQSQVSPKDT  540
QSRQSSLSTR SRTKGFAVGR AVDLTTIKGY PQLISELERL FDIQGQLQFR DKWEIVYTDD  600
EGDMMLVGDD PWAEFCNMVR RIIICSSQDV KRMRNPGSKN PMLGVEGGDG GAAIAVSSDS  660
AVENSKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17623513361Auxin response factor 1
4ldw_A1e-17623513361Auxin response factor 1
4ldw_B1e-17623513361Auxin response factor 1
4ldx_A1e-17623513361Auxin response factor 1
4ldx_B1e-17623513361Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361365KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518850.20.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLB9RYN10.0B9RYN1_RICCO; Auxin response factor
STRINGLus100230580.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9