PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023032
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 331aa    MW: 36249.6 Da    PI: 7.7703
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.4e-3852111261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++++l+cprC+stntkfCyynnysl+qPry+Ck+C+ryWt+GG+lrn+PvGgg+rknk+ 
  Lus10023032  52 QKAILNCPRCNSTNTKFCYYNNYSLTQPRYYCKTCKRYWTEGGSLRNIPVGGGSRKNKRP 111
                  56789****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2449104IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3255110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.62156110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPIEEILT TPQNQKPGGG GGKVNSSSRN NNNDVTDQKE QQKAILNCPR  60
CNSTNTKFCY YNNYSLTQPR YYCKTCKRYW TEGGSLRNIP VGGGSRKNKR PHPPPNPSDP  120
SSSSNNYSNP SKKLPGLVSS PASTLPPPPL NPKMIQDQEG QLHHQDLNLA FPRSFTELIS  180
HHHHHESNKN NNNNHVSAME LLTGISSSSS GPSFMHMPPS GHVYNNNASP FPGVNVMHDD  240
HQEFVKPSGL SFSLDDIGLG ISTNSNGNSN GNSSNRPFFS FEDLKQVPPT NNHHHHDHSN  300
GKEDQQQQQH VADSNGYWTG MLGGGGGGSW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572725e-45DQ857272.1 Glycine max Dof28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737236.12e-70PREDICTED: dof zinc finger protein DOF4.6
TrEMBLA0A2P2JZL45e-70A0A2P2JZL4_RHIMU; Uncharacterized protein MANES_02G005000
STRINGLus100230320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-39Dof family protein