PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022959
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 548aa    MW: 59034.3 Da    PI: 7.0027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022959genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30332391159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+H h+
  Lus10022959 332 MNDGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCAEDQSILITTYEGHHSHP 391
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33317393IPR003657WRKY domain
SuperFamilySSF1182904.45E-28325393IPR003657WRKY domain
PROSITE profilePS5081129.539327393IPR003657WRKY domain
SMARTSM007744.9E-37332392IPR003657WRKY domain
PfamPF031068.1E-27333391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MVISEFDFFS NDNLLLPKKQ DDDVSTLDAL LMAQEAFSVD IHPSCLLNTG LHLVTGSSGS  60
EKSNVADDGG VSQNTDDHNR TINKLAVLQA EMDRVIAENQ QLRSSLNQVN SDYNALQIQL  120
FALMHQQQPP KQHLKSSTDN QVQMKSIEYK NGASSTGAMV ARQFIEMGKA PENKSMNSSR  180
LVGLEEDASQ TTSEEERSAD CSMDCKSSSP KSTGNTMVLR RSSRENGAVQ DRYDLRSSSS  240
ADHHHNNNNT SYRNNASTTD HSNNNNSSGN NIIQKHVQHQ QQPGGWTPNK LPKFEACASS  300
SAEAEERKAE NTLSMIKKAR VSVRARSEAA MMNDGCQWRK YGQKMAKGNP CPRAYYRCTM  360
ASGCPVRKQV QRCAEDQSIL ITTYEGHHSH PLPPAAITMA STTSAAASML LSGSMPSADG  420
LPNTNLLARS LQLSSPPSMA TLSASSPFPT VTLDLTHPSA TIQHHHASTQ FLSSPNFAPQ  480
HLFGLHPEAN ASSQSPADIA SAATAARTAD PNFTAALVAA VTSIIGSGHR TNNGNSSPNV  540
TTHIENT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22319395176WRKY transcription factor 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100229590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-64WRKY family protein