PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022936
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 116aa    MW: 13517.2 Da    PI: 10.0993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022936genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-192374155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f +aeeAa+a+++a+ +++g
  Lus10022936 23 PQYRGIRRRP-WGKFAAEIRDPTRNG--ARRWLGTFESAEEAARAYDRAAFAFRG 74
                 68********.**********98887..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-122374IPR001471AP2/ERF domain
CDDcd000181.59E-262383No hitNo description
SMARTSM003809.1E-352488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302484IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-232483IPR016177DNA-binding domain
PROSITE profilePS5103224.3952482IPR001471AP2/ERF domain
PRINTSPR003672.4E-102536IPR001471AP2/ERF domain
PRINTSPR003672.4E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGRRRSEQPR NGETEQYEEA PPPQYRGIRR RPWGKFAAEI RDPTRNGARR WLGTFESAEE  60
AARAYDRAAF AFRGNLAILN FPNEYQAATN HHVQYSQQLQ LQPLLVKWLV DWIKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2720901080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022936
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021688008.13e-37ethylene-responsive transcription factor ERF098-like
RefseqXP_021688087.13e-37ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC58e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1L6CAZ41e-37A0A1L6CAZ4_9ROSI; AP2/ERF domain-containing transcription factor (Fragment)
STRINGLus100229362e-80(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]