PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022915

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 309aa MW: 35336.7 Da PI: 6.3172

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022915	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.1	2.1e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kk++++++ ++ ++d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ ++ Lus10022915 10 LPPGFRFYPSDEELVCHYLFKKISNEEVLK-GTLVDIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVEPnTK 106 79***********************655.78***********88888999*********************************99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 e+vg++ktLvfy++rap+g kt W+mhe+rle Lus10022915 107 EVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 88*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.406	10	156	IPR003441	NAC domain
Pfam	PF02365	2.6E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLFK KISNEEVLKG TLVDIDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV VEPNTKEVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HLPPKKDWVL CRVFHKSKAS SEDYNNLSPP NYYNYNPTPL 180 VQPNHQCPLT NNGQQLAVPA TGVYDHHQQH PPAGSLLNLL LQDREKLLMM NHKEDSNHDD 240 HKSSNPQSEI IVSSKPSSTN DQVDQFAGFL WDEMNLDETC SLGDGVVVGS DFDDMRFDHI 300 DTNNMFLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-46	9	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-46	9	162	19	174	NAC domain-containing protein 19
3swm_B	4e-46	9	162	19	174	NAC domain-containing protein 19
3swm_C	4e-46	9	162	19	174	NAC domain-containing protein 19
3swm_D	4e-46	9	162	19	174	NAC domain-containing protein 19
3swp_A	4e-46	9	162	19	174	NAC domain-containing protein 19
3swp_B	4e-46	9	162	19	174	NAC domain-containing protein 19
3swp_C	4e-46	9	162	19	174	NAC domain-containing protein 19
3swp_D	4e-46	9	162	19	174	NAC domain-containing protein 19
4dul_A	3e-46	9	162	16	171	NAC domain-containing protein 19
4dul_B	3e-46	9	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022915

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050267.1	1e-123	PREDICTED: NAC domain-containing protein 21/22
TrEMBL	A0A061DNM9	1e-122	A0A061DNM9_THECC; NAC domain protein, IPR003441
STRING	Lus10022915	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-92	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Lus10022915