PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10022914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 160aa MW: 17912.6 Da PI: 9.6776 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.5 | 2e-17 | 7 | 130 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevlskkg 97 p+G+rF+P+ e+++ eyL kv+g++l+ vi + d+y + ++ +++ +e+yf +k kk+++ g r r + ++g+W + +dk+v++ +g Lus10022914 7 PVGYRFRPSGEQVI-EYLVDKVKGNTLPS--VIFDGDLYGEDEVWIRLFSETNASELYFCTKLPKKKKKgGIRVARtVGTKGTWTS-SQDKPVYT-RG 99 89************.***********988..899******99998985556677899999998888776478999*55669***96.578*****.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++g k+++ + +++++ + + vm+eyrl Lus10022914 100 VHIGSKRSFSYQEKEKSAAGGLRFVMDEYRL 130 9***********99999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-18 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.596 | 6 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-12 | 7 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MRIPGAPVGY RFRPSGEQVI EYLVDKVKGN TLPSVIFDGD LYGEDEVWIR LFSETNASEL 60 YFCTKLPKKK KKGGIRVART VGTKGTWTSS QDKPVYTRGV HIGSKRSFSY QEKEKSAAGG 120 LRFVMDEYRL DGVLGEHPEA AEVVICCVRK KVESNLYRL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10022914 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10022914 | 1e-114 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-08 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10022914 |