PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022736
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 298aa    MW: 32972.3 Da    PI: 5.3881
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022736genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.92.7e-20105170159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE....E-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve....rsaedpkvveitYegeHnhe 59 
                  +dDgy WrKYG K++ +sefpr YYrCt++   +C+++k+v+    r++ d+ +  +tY ++H+++
  Lus10022736 105 VDDGYGWRKYGHKNIIKSEFPRLYYRCTHKkeqNCQATKQVQmitqRDSPDQLIYRTTYYSRHTCN 170
                  59***************************99999*******7333367779999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-2199170IPR003657WRKY domain
SuperFamilySSF1182901.11E-20100170IPR003657WRKY domain
PROSITE profilePS5081116.432100167IPR003657WRKY domain
SMARTSM007742.3E-30105171IPR003657WRKY domain
PfamPF031061.4E-21106169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MENQTAVDEL QRGHAFTSQL KLLLDTTADF KSQGDGSADD LVARILSTFT HSLSLLTSIN  60
NADDQEDESG RKSEGSSGDG NKRSTRRKQK RPSPYSWVKD STNLVDDGYG WRKYGHKNII  120
KSEFPRLYYR CTHKKEQNCQ ATKQVQMITQ RDSPDQLIYR TTYYSRHTCN NNGGRRIMLQ  180
EDEPVDYLAG CHVISFGKQG GQLDDHDVMS RSFSPPSFAA AATSDVVGGE MDKLGDDLDG  240
SGGKMTGIND AIHQGANSAS SDDSCSNGSS SDDFMRMMMM TRMESFNDFE TLLGLNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13105169868OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100227360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-22WRKY DNA-binding protein 62