PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022621

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 504aa MW: 57423.4 Da PI: 5.3374

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022621	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.4e-28	285	335	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCR yGI+RWP+Rkik++ Lus10022621 285 EKTVSLDVLRQYFAGNLKDAAKNLGVCPTTLKRICRSYGINRWPSRKIKKV 335 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.893	274	355	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-24	287	335	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.45E-22	392	482	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-22	397	479	No hit	No description
SMART	SM00666	5.0E-21	398	482	IPR000270	PB1 domain
PROSITE profile	PS51745	22.982	398	482	IPR000270	PB1 domain
CDD	cd06407	5.49E-36	401	481	No hit	No description
Pfam	PF00564	2.7E-18	401	481	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MIQSTMDDDK DTGFAPTAMD FDFMDQFLDE EWLIGTDESN NDPNETVPYS IKERLENAIN 60 KWKESTEEHY RDVLVQIWMP IDEHVLTTKG QPYFLTPLSI NLASYRDVSK AFRADLRSKE 120 FLGLPGRVFL AKFPEWTPDV RYFKSEEYPR RSFAAQYSIS GSLAFPVFER GGFGACLGVV 180 EVVTMTRDIE YRPELERVCK ALEAVDLRSS EDFIPPSVKG CKEFYQSVME KENYQEEPSW 240 ISRFMEGHRE GGSYLEKTPR NEVEPIVNRG SSSSRANEKR RAKLEKTVSL DVLRQYFAGN 300 LKDAAKNLGV CPTTLKRICR SYGINRWPSR KIKKVGHTLK KLQLVIDSVH GAEGSIQISS 360 FYTAFPDLNH SGNETSQQVS PPQSSNCSSC KEEDHGGAFG VKASFGEEKA RFSLPSSWGF 420 EDLMREVLHR FNVDEKSCRV DLKYLDDDHE WVLLTCDADL EECKDVCRSE QRHMIELSLH 480 QSQFTSVLAK TGQQRNNNGQ TSG*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MIQSTMDDDK DTGFAPTAMD FDFMDQFLDE EWLIGTDESN NDPNETVPYS IKERLENAIN  60
KWKESTEEHY RDVLVQIWMP IDEHVLTTKG QPYFLTPLSI NLASYRDVSK AFRADLRSKE  120
FLGLPGRVFL AKFPEWTPDV RYFKSEEYPR RSFAAQYSIS GSLAFPVFER GGFGACLGVV  180
EVVTMTRDIE YRPELERVCK ALEAVDLRSS EDFIPPSVKG CKEFYQSVME KENYQEEPSW  240
ISRFMEGHRE GGSYLEKTPR NEVEPIVNRG SSSSRANEKR RAKLEKTVSL DVLRQYFAGN  300
LKDAAKNLGV CPTTLKRICR SYGINRWPSR KIKKVGHTLK KLQLVIDSVH GAEGSIQISS  360
FYTAFPDLNH SGNETSQQVS PPQSSNCSSC KEEDHGGAFG VKASFGEEKA RFSLPSSWGF  420
EDLMREVLHR FNVDEKSCRV DLKYLDDDHE WVLLTCDADL EECKDVCRSE QRHMIELSLH  480
QSQFTSVLAK TGQQRNNNGQ TSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022621

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012833788.1	1e-100	PREDICTED: protein NLP2-like
STRING	Lus10022621	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	2e-61	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Lus10022621