PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022610

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 223aa MW: 23831.9 Da PI: 7.7429

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022610	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Lus10022610 80 YQCKTCDRCFNSFQALGGHRASH 102 9***********99999998887 PP
2	zf-C2H2	13.6	0.0002	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Lus10022610 146 HECSICGAGFSSGQALGGHMRRH 168 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.54E-9	79	102	No hit	No description
Pfam	PF13912	1.6E-9	79	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.138	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.54E-9	141	168	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-4	144	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.4E-12	145	169	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	146	168	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	146	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MADMVTAIDK VVVKGKRTKR QRPLLLTANS NTNIQVSSTA TTSTTSSTSA ESTCTEEEDM 60 ANCLILLAQG TASPAEAFVY QCKTCDRCFN SFQALGGHRA SHKRLRTEED KGNDGGKVVA 120 AVKSVDRKEE LDLSLGIVNS KQSKVHECSI CGAGFSSGQA LGGHMRRHRT VVEPPLPVRS 180 GLELDLNLPA PEDVDGRELN KFRFVFSSSS AAVASALVDC HF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022610

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027469.1	1e-52	PREDICTED: zinc finger protein ZAT5
Swissprot	Q681X4	2e-42	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A061ET06	3e-51	A0A061ET06_THECC; Nucleic acid binding protein, putative
STRING	Lus10022610	1e-163	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-37	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10022610

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]