PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 625aa MW: 68371.9 Da PI: 7.1317 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 379 | 416 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Lus10022599 379 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 416 554459******************************88 PP | |||||||
2 | BELL | 109.2 | 2.5e-35 | 250 | 318 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kk++L+s+l+eV++rYkqy++q+++v+ sFe+vaglg+a+pY++lAlka+S+hFr+Lk+ai++q+ Lus10022599 250 ESRRKKSRLISMLDEVYRRYKQYYQQMEAVVTSFECVAGLGNAAPYANLALKAMSKHFRSLKNAITDQL 318 7899**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.6E-50 | 185 | 316 | IPR006563 | POX domain |
Pfam | PF07526 | 7.6E-37 | 190 | 315 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 357 | 420 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-10 | 360 | 424 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.12E-13 | 360 | 421 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 362 | 426 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 363 | 424 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 377 | 416 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MAEGYEAYHV PQQSRRDKLR DQLLHHHHHH LVAHNQDNNN AAHLLHPPLP PPLYDAPSSS 60 DFLPKHHSSN FTGFISPNYM DSANSSNLPT LNPTDTSIHS QSPNPFLNFH PSPATGALLF 120 KPEPLSLSLS TSHHNQQHQH QQQQHHNGLN FQSYVLPTTG INVAGGGDAV ASRCSVDVLP 180 LGPFTGYASV LKGSRFLNPA QQLLEEFCDV VGGGILIPAG EKIAPDPSLL DPPLDDVDPL 240 SYGSSEFGAE SRRKKSRLIS MLDEVYRRYK QYYQQMEAVV TSFECVAGLG NAAPYANLAL 300 KAMSKHFRSL KNAITDQLSK ASLGKDDHAL ASSTVKLGSY GITRHNGQSS GLIEHHQPVW 360 RPQRGLPERA VTVLRAWLFE HFLHPYPTDT DKLMLAKQTG LSRSQVSNWF INARVRLWKP 420 MVEEIHTLET RQAKKAAHKD DHQRNKATTT DHHQQPPYSN SDAAAGGSNP STSSQPAFDV 480 PIPKRTRNEL PPSDHMSVGS NEDHQQHQHQ HQQLYNNTSN NNMQSYGGEG FSDGHLGMEA 540 GGGGVVGGVS LTLGLHQHHH QGIGFLEPPP FSITSVAAQR FGLDTGGVSE GYNVMGGGSG 600 FDSPQNRNFG RDVMGGQLLH DFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-16 | 366 | 424 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-16 | 366 | 424 | 5 | 63 | Homeobox protein Meis2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022599 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015581269.1 | 1e-172 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | B9SV36 | 1e-173 | B9SV36_RICCO; Bel1 homeotic protein, putative | ||||
STRING | Lus10022599 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2810 | 33 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 1e-75 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | Lus10022599 |