PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 625aa    MW: 68371.9 Da    PI: 7.1317
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022599genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093794161954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Lus10022599 379 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 416
                  554459******************************88 PP

2BELL109.22.5e-35250318472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e ++kk++L+s+l+eV++rYkqy++q+++v+ sFe+vaglg+a+pY++lAlka+S+hFr+Lk+ai++q+
  Lus10022599 250 ESRRKKSRLISMLDEVYRRYKQYYQQMEAVVTSFECVAGLGNAAPYANLALKAMSKHFRSLKNAITDQL 318
                  7899**************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-50185316IPR006563POX domain
PfamPF075267.6E-37190315IPR006563POX domain
PROSITE profilePS5007112.098357420IPR001356Homeobox domain
SMARTSM003893.4E-10360424IPR001356Homeobox domain
CDDcd000864.12E-13360421No hitNo description
SuperFamilySSF466895.13E-17362426IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27363424IPR009057Homeodomain-like
PfamPF059201.1E-18377416IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MAEGYEAYHV PQQSRRDKLR DQLLHHHHHH LVAHNQDNNN AAHLLHPPLP PPLYDAPSSS  60
DFLPKHHSSN FTGFISPNYM DSANSSNLPT LNPTDTSIHS QSPNPFLNFH PSPATGALLF  120
KPEPLSLSLS TSHHNQQHQH QQQQHHNGLN FQSYVLPTTG INVAGGGDAV ASRCSVDVLP  180
LGPFTGYASV LKGSRFLNPA QQLLEEFCDV VGGGILIPAG EKIAPDPSLL DPPLDDVDPL  240
SYGSSEFGAE SRRKKSRLIS MLDEVYRRYK QYYQQMEAVV TSFECVAGLG NAAPYANLAL  300
KAMSKHFRSL KNAITDQLSK ASLGKDDHAL ASSTVKLGSY GITRHNGQSS GLIEHHQPVW  360
RPQRGLPERA VTVLRAWLFE HFLHPYPTDT DKLMLAKQTG LSRSQVSNWF INARVRLWKP  420
MVEEIHTLET RQAKKAAHKD DHQRNKATTT DHHQQPPYSN SDAAAGGSNP STSSQPAFDV  480
PIPKRTRNEL PPSDHMSVGS NEDHQQHQHQ HQQLYNNTSN NNMQSYGGEG FSDGHLGMEA  540
GGGGVVGGVS LTLGLHQHHH QGIGFLEPPP FSITSVAAQR FGLDTGGVSE GYNVMGGGSG  600
FDSPQNRNFG RDVMGGQLLH DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16366424563Homeobox protein Meis2
4xrm_B9e-16366424563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581269.11e-172BEL1-like homeodomain protein 9
TrEMBLB9SV361e-173B9SV36_RICCO; Bel1 homeotic protein, putative
STRINGLus100225990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-75BEL1-like homeodomain 8