PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | FAR1 | ||||||||
Protein Properties | Length: 169aa MW: 18630 Da PI: 8.2019 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.5 | 4.2e-08 | 41 | 116 | 7 | 80 |
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk 80 A ++GF++++ ++kk+ ++e ++ ++Cs gk +++ ++++k++rt+++ gC+ ++ v+ ++ kw+++ Lus10022558 41 ALDLGFQLTRGSHKKN-PSEEEKRLYLYCSHGGKCKSQPTASSKSSRTTTTPYSGCTFMVCVRSRRvdaGWKWRIDP 116 7889********9999.5556789999**************99********************99884455677765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.6E-5 | 41 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MTGALEVTVW NAATEFNYLS VIPFVREVIV DDTCDAAKDI ALDLGFQLTR GSHKKNPSEE 60 EKRLYLYCSH GGKCKSQPTA SSKSSRTTTT PYSGCTFMVC VRSRRVDAGW KWRIDPVKDD 120 VKEGFLGPST TTSLRRRERA ARSGAGEAAA EGECFQRWEC FPRGESCG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022558 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10022558 | 1e-122 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13554 | 2 | 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10022558 |