PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022485
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 743aa    MW: 81194 Da    PI: 6.5263
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022485genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-094965331954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Lus10022485 496 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 533
                  664559******************************88 PP
2BELL95.16.2e-313704241872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +Vd+rY++y+eq+q+v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdaia q+
  Lus10022485 370 KVDRRYNHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAIAAQL 424
                  7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.9E-21340422IPR006563POX domain
PfamPF075266.8E-27355421IPR006563POX domain
PROSITE profilePS5007112.568474537IPR001356Homeobox domain
CDDcd000863.05E-13477538No hitNo description
SMARTSM003891.3E-9477541IPR001356Homeobox domain
SuperFamilySSF466894.11E-17479544IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28480543IPR009057Homeodomain-like
PfamPF059203.7E-18494533IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGIAINSLSF PHPHNSAVDS RLCYSMSQDY HHHHQDGGAG GGNGGGGGGG GGGGIFSFSS  60
NNGFDDERTP QVDQHQHMAQ QVRRDKLRIQ AEYPTHPPPQ SSLVGIDEAQ DQNSAALHHH  120
QVNETSGMLS EMFNFAAGGP VPTAVELLDH HQSSLPRQQM DGGEWYGGRQ GMVIDGLGEG  180
DRSKSQHHQH HNHNNRESST DYNEARQQQQ HHQTISGSIN AEEAAAAMQL FLPRSPSPSP  240
HSSSTLHMLL PDPHQQQFSW IPGGGATTAP SEIGRGGEGK GVSLSPSSYX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTTTE AAVHPTTPPK DLCPPPPLSS  360
SDRMEHQRRK VDRRYNHYCE QMQMVVNSFD LVMGYGAAVP YTALAQKAMS RHFRCLKDAI  420
AAQLKQSCEM LGEKDSAGAG GSAGITRGET PRLKALEQSL RQQRAFHQMG MMEQEAWRPQ  480
RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMIE  540
DMYQQEAKEA DDETSQDNRE HDQQADVQTS SQTQPSPTTT VAMLSSAVGT AASIRSGIGD  600
ENDPSSSSLM VINRQCFSEN QASTTTPTPT PTTTTTNINI TGATMMDMPF HDFADDPTCH  660
RRAGISADYA GTSVGGHHHV SAHDHTLIGP NTIITTAPPM QIRYGTTAAA AGDVSLTLGL  720
RHAGNMPEKA SSTFSIRDFG DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17483540158Homeobox protein Meis1
4xrs_B9e-17483540158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632595.11e-155BEL1-like homeodomain protein 4
RefseqXP_021632596.11e-155BEL1-like homeodomain protein 4
SwissprotQ9SW801e-127BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A251JJM31e-154A0A251JJM3_MANES; Uncharacterized protein
STRINGLus100224850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-114BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]