PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022473
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 330aa    MW: 38184.2 Da    PI: 7.2159
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022473genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87e-1244993799
                 EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +   +sg +W v +   +   ++ +++GW eF++++ Lk g f+vF+++g+s+f  +v +++k
  Lus10022473 44 V---PSGVKWVVSV--ARDELGVRFSNGWHEFAESHSLKHGHFFVFEYEGSSSF--FVVICDK 99
                 3...899*******..999999***************************99999..9***998 PP
2B342.71e-13229321198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff+++++s +l+++ l +p +f ++h gk  +s++ ++   s + W+v l    +s+ + +t+ W+ F k+n L++gD++ F+ +  +++ l+v++fr
  Lus10022473 229 FFSIEMTSKMLAKKDLHVPVSFSTNHIGKDDKSVKFQV---SDKPWSVALMRYIYSKYVCFTDDWNLFTKENSLNSGDVCFFESV--QRTLLNVTIFR 321
                  89999******************999666556655554...569******88999999*************************44..55667999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-1310107IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-412100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-1322100IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-92795No hitNo description
PROSITE profilePS5086311.77331100IPR003340B3 DNA binding domain
PfamPF023621.5E-94599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17222321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16223321IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-8228321No hitNo description
PROSITE profilePS5086311.223229323IPR003340B3 DNA binding domain
PfamPF023626.1E-11229321IPR003340B3 DNA binding domain
SMARTSM010198.9E-7230323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNIRNEHMIS HTKRIRQDDC DERIIRTRFF KIILDDTIRH KKLVPSGVKW VVSVARDELG  60
VRFSNGWHEF AESHSLKHGH FFVFEYEGSS SFFVVICDKT ATKIAYPKKQ QQPDEEGDKL  120
FPQPKLQQCE KEEEVEAFDH RDDDDVAPVN KDGELHLSNS TKSSLVVREM RPCRWGIATF  180
KFHKVLLSRQ GDEALWDDKK EGGADDKRRI YDDHRPHAPI TEFSSQHPFF SIEMTSKMLA  240
KKDLHVPVSF STNHIGKDDK SVKFQVSDKP WSVALMRYIY SKYVCFTDDW NLFTKENSLN  300
SGDVCFFESV QRTLLNVTIF RGCALPAGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022473
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100224730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-17B3 family protein