PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022444

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YC

Protein Properties

Length: 299aa MW: 32775.1 Da PI: 6.7184

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022444	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.5	1.3e-55	62	165	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaee+krrtl+k+diaaa+trtdifdflvdi Lus10022444 62 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEESKRRTLQKNDIAAAITRTDIFDFLVDI 159 89***998899********************************************************************************* PP NF-YC 96 vprdel 101 vprd+ Lus10022444 160 VPRDDN 165 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.64E-33	42	156	IPR009072	Histone-fold
Pfam	PF00808	2.4E-20	84	147	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.5E-36	85	162	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDANSHQQQQ QQQQSSSSYQ SSIPTTPTPP PPPPPPPAAP SSAAAASAGP PPHHLLQQQQ 60 HQLQMFWSYQ RQEIEQVNDF KNHQLPLARI KKIMKADEDV RMISAEAPIL FAKACELFIL 120 ELTIRSWLHA EESKRRTLQK NDIAAAITRT DIFDFLVDIV PRDDNKEDAG LAAGTVPATA 180 SGVPYYYPAA PPPGMMIGRP ALDPSGVYVQ PPSQAWQSAW QTTSTDDVSY ASGGTTGQSN 240 LDGQGSKLQF EIRLGLRCML KLRSMIPGIL PVTMGFLVDV PHYICRLGNY NDHPDKKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-53	70	162	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022444

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550738.1	1e-111	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-101	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	R0FL35	1e-110	R0FL35_9BRAS; Uncharacterized protein
STRING	Lus10022444	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11071	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-93	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Lus10022444

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]