PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 98aa MW: 10522.3 Da PI: 11.1206 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Lus10022204 32 YECSFCKRGFTNAQALGGHMNIH 54 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.48E-7 | 29 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 30 | 56 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.531 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.009 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-5 | 32 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MAPKKQRSSS DSSSEDTVND TVVSLPKPKR SYECSFCKRG FTNAQALGGH MNIHRRDRKK 60 STASAAAANV RQPVGXXXPP AGWPLRRLGC SISPLVL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022204 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453938.1 | 4e-18 | PREDICTED: transcriptional regulator TAC1 | ||||
Swissprot | Q9SR34 | 4e-14 | TAC1_ARATH; Transcriptional regulator TAC1 | ||||
TrEMBL | A0A0D2UUB9 | 9e-17 | A0A0D2UUB9_GOSRA; Uncharacterized protein | ||||
STRING | Lus10022204 | 3e-63 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10022204 |
Publications ? help Back to Top | |||
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