PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022150
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 546aa    MW: 59545.4 Da    PI: 5.8997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022150genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25239295259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+++g H h+
  Lus10022150 239 PDGYNWRKYGQKQVKSPNGSRSYYRCTHSDCCAKK-IECSDQSGHVIEIVNKGLHSHD 295
                  5********************************98.*********************7 PP
2WRKY95.83e-30411467359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK+vkg+ +pr+YYrCtsagCpv+k++e++a + +vv+itY+g H+h+
  Lus10022150 411 DGYRWRKYGQKMVKGNAHPRNYYRCTSAGCPVRKHIETEAGNSSVVIITYKGIHDHD 467
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-19235297IPR003657WRKY domain
SuperFamilySSF1182906.67E-20236297IPR003657WRKY domain
SMARTSM007746.2E-23238296IPR003657WRKY domain
PROSITE profilePS5081116.685240297IPR003657WRKY domain
PfamPF031061.3E-16240294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-30394469IPR003657WRKY domain
PROSITE profilePS5081130.274404469IPR003657WRKY domain
SuperFamilySSF1182901.7E-26405469IPR003657WRKY domain
SMARTSM007742.8E-34409468IPR003657WRKY domain
PfamPF031064.4E-23411466IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAESERLVVP QPHQNNEPKQ VSTDHVDVIF DRDGDESDAV VVDNDSGGGE EEDGENDKDE  60
TQPELRRLTP EEDSAEPLSS MQHEKPGNLD VTASALVSEN DQCIGELSGG YDLLQELIWK  120
VIARDLPGSL GNSALETRTE AGFEEQVGLS QKEVAVCISP KNAKAESDNQ LQLWVFPAPL  180
SGLSPTSVSQ PISSVPDPTV PEQRFPLSKG STLTVQEANQ QMPSYIKKLT MPVLKTPIPD  240
GYNWRKYGQK QVKSPNGSRS YYRCTHSDCC AKKIECSDQS GHVIEIVNKG LHSHDLPQKS  300
NSKRESRVAT SGRPIPSSII AEHSVVPQES DPVLSEQPKQ QKTIVADGNR LDSFASDENN  360
AAQTNEEHIC EPETKKRLKK DSLDCPEALF KPGKKSKFVV HAAGDVGISG DGYRWRKYGQ  420
KMVKGNAHPR NYYRCTSAGC PVRKHIETEA GNSSVVIITY KGIHDHDMPV PKKRHGPPSA  480
SLVAAAAAAG STNAVQQQKS SMKWPARKEG EITSETTPDA RGGDKDKVIE SARTLLSIGF  540
EIKPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-25396469174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690058.11e-166probable WRKY transcription factor 32
SwissprotP595831e-123WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2K1WZ371e-162A0A2K1WZ37_POPTR; Uncharacterized protein
STRINGLus100221500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-122WRKY DNA-binding protein 32