PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 239aa MW: 27394.8 Da PI: 5.4699 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 131.4 | 1e-40 | 28 | 234 | 161 | 374 |
GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFle 255 ++rL fA+++++++++n l + l++l+++ ++ +++E+l+V+ +++lh+l ++ ++er+e+L++++sl+Pk v+++e+++d++ + ++ Lus10022097 28 FASRLLCFAKSMNINLQINRLDNRPLQNLNTQVINKDREETLVVCAQFRLHHLN---HNNPDERSEFLRVLRSLEPKGVILSENNMDCSCNgcvDYSS 122 679*****************9999*****************************8...55566667********************8883333459*** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 +f++ +ey + ++ds+++ + + r + Er++++ e+ ++++++g++ +e++e+W er++ +GF+ + e+a ++a++llrk++ ++++rve Lus10022097 123 GFTRRVEYLWRFLDSTSSAF----KGRESEERRMMEGEAAKALTNRGEM----NERKEQWCERMRGVGFSGEGFCEDAIDEARALLRKHDnNWEMRVE 212 ****************7765....6666666666777799999999998....88888********************************9999**** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e++g + l Wk++p+ ++S W+ Lus10022097 213 EKDGFVGLWWKKQPVSFCSLWK 234 *********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.986 | 1 | 213 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-38 | 28 | 234 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVTAAIEGSS DQSCSEPPFS IGPPGDNFAS RLLCFAKSMN INLQINRLDN RPLQNLNTQV 60 INKDREETLV VCAQFRLHHL NHNNPDERSE FLRVLRSLEP KGVILSENNM DCSCNGCVDY 120 SSGFTRRVEY LWRFLDSTSS AFKGRESEER RMMEGEAAKA LTNRGEMNER KEQWCERMRG 180 VGFSGEGFCE DAIDEARALL RKHDNNWEMR VEEKDGFVGL WWKKQPVSFC SLWKLQAE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022097 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021638883.1 | 1e-131 | nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 1e-118 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | Q4VYC4 | 1e-128 | Q4VYC4_POPTR; Nodulation Signaling Pathway 1 protein homologue 1 | ||||
STRING | Lus10022097 | 1e-177 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 8e-77 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10022097 |
Publications ? help Back to Top | |||
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