PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HSF | ||||||||
Protein Properties | Length: 377aa MW: 43109.6 Da PI: 5.8041 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 49 | 141 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e++ed+ +++++sws+ g+sfvv+d+++f++++Lp++Fkhsnf+SFvRQLn+YgF+k++ e+ weF+ + F +g+k+ll++i+ Lus10022083 49 FLTKTFEMVEDPIIDDVVSWSRGGTSFVVWDPDSFSNNLLPRFFKHSNFSSFVRQLNTYGFRKIDPER---------WEFAAEGFLRGQKHLLKNIR 136 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Lus10022083 137 RRKAT 141 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.5E-58 | 45 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.85E-34 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.0E-31 | 49 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-18 | 49 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-18 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 88 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-18 | 100 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MNPFFTVKEE LFDVGYGYQD PRPHLPPTTR TAPPPQPIEG LHDAGPPPFL TKTFEMVEDP 60 IIDDVVSWSR GGTSFVVWDP DSFSNNLLPR FFKHSNFSSF VRQLNTYGFR KIDPERWEFA 120 AEGFLRGQKH LLKNIRRRKA TSPSSLSYPP PPFPSKTYPI PDQAADASAV ELGRFGFDEE 180 INRLKRDKQV LTIELVKLRR QQQSTREFVA ELERRLRETE TKQHQMMQFL ARAVQNPAFL 240 HQLKDKRKEL QEALNNKRRR RRPIGESSKN RLLVKPEPLE YGFGWSDELE ALALEMQGYG 300 KGIRKVAEEE EEEYIEATSD QELDDGFWEE LLSESTGGDE GVGGDQEAVT ALAEQLGYLP 360 IRLKVNGKRG IPSATF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-24 | 44 | 144 | 12 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 261 | KRKELQEALNNKRRRRR |
2 | 256 | 261 | KRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022083 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520943.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_015575825.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_015575826.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013446.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013447.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013448.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013449.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013450.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013451.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013452.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Refseq | XP_025013453.1 | 1e-138 | heat stress transcription factor A-7a | ||||
Swissprot | Q8H7Y6 | 1e-104 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | B9S4N6 | 1e-137 | B9S4N6_RICCO; DNA binding protein, putative | ||||
STRING | Lus10022083 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-94 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Lus10022083 |