PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 26688.5 Da PI: 9.3476 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lus10022080 104 FVCEICKKGFQRDQNLQLHRRGH 126 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.001 | 183 | 205 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Lus10022080 183 WKCEKCSKIYAVHSDWKAHSKTC 205 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.25E-5 | 102 | 127 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-5 | 103 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.887 | 104 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 280 | 148 | 178 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.2E-4 | 171 | 204 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 180 | 183 | 203 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MFPGHAMFNN SAASFSEEED EEDHARLLLV PPHHHQAADN FFNNLITNHQ PAPSSTLFFP 60 NSATVVLPDT SLPPAKAKKK RSLPDPEAEV IALSPKALLA TNRFVCEICK KGFQRDQNLQ 120 LHRRGHNLPW KLKQRNHNKE EPIKKKAYVC PEPSCVHHHP SRALGDLTGI KKHYCRKHGE 180 KKWKCEKCSK IYAVHSDWKA HSKTCGTREY RCDCGTLFSR YVCMSISHNF SLSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-21 | 179 | 220 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 1e-21 | 179 | 220 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022080 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465513.1 | 9e-96 | PREDICTED: protein indeterminate-domain 12-like | ||||
Swissprot | Q9ZWA6 | 1e-86 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A1S3CP21 | 2e-94 | A0A1S3CP21_CUCME; protein indeterminate-domain 12-like | ||||
STRING | Lus10022080 | 1e-175 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 9e-89 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10022080 |
Publications ? help Back to Top | |||
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