PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021881
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 198aa    MW: 22012.6 Da    PI: 6.219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021881genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162446123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Lus10021881 24 YECSFCKRGFTNAQALGGHMNIH 46
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-72150No hitNo description
Gene3DG3DSA:3.30.160.602.7E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5522451IPR007087Zinc finger, C2H2
SMARTSM003550.0092446IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDSSSEERND EVQQRSIPSP RRFYECSFCK RGFTNAQALG GHMNIHRRDR SPHYSXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXC LSESSSSSSA AVNLDSRPAA GFIWQDSNPR  120
HHQHPYVYFQ QQVQGSHPMV PPSPESSQNQ GASSPVTVSE QQVIWGANLS LQVGPAGSAE  180
LANDGDDVDL ELRLGHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100218811e-111(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-15C2H2 family protein