PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10021798

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 475aa MW: 51751.6 Da PI: 5.6683

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10021798	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+ +++ ++ H ++ Lus10021798 121 FECPICGQAYRSEEDVSAHVESC 143 89*****************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	5.2E-7	21	59	No hit	No description
CDD	cd09212	2.93E-20	180	276	No hit	No description
SuperFamily	SSF143503	8.11E-18	193	269	IPR018997	PUB domain
SMART	SM00580	7.6E-16	193	257	IPR018997	PUB domain
Pfam	PF09409	1.6E-14	194	256	IPR018997	PUB domain
SuperFamily	SSF54236	1.19E-11	339	449	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	5.2E-7	353	416	No hit	No description
PROSITE profile	PS50033	9.525	365	449	IPR001012	UBX domain
Pfam	PF00789	6.5E-5	366	416	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MDDMKDKFKG FVKKVSSSSS GKFKGQGRVL GTNSSSSSSS DSYNSVYARF SQPVNPKPTP 60 NPSSHSNSIP SPQKSSAPVH GSSKPASSSA PIPKPSNGFD AFGPLITSSE RSKNGYSLNV 120 FECPICGQAY RSEEDVSAHV ESCVTEGVRV ADVTSNGSDD NNNAVSDGKI DEEVSLLDES 180 CVAAYLSGKP PEGSLEVVLR LFRNIVRDPE NVKFRRVRMG NPKIREAVTD VAGGVELLEL 240 AGFELKEEGG EMWALMEDVP GKERIGLINK VIGFLEPSKV ENMKASIVPV EEDQPAERKK 300 IDRQIKVFFA VSENVAAKIE VPDSFYNLSA IELKREADMR KKKLAESQLL VPKSFREKQA 360 KAARRKYTRT VVRIQFPDGV VLQGVFAPWE PTTALYEFVG LALKDNSLEF DLMHPVIVKR 420 RVIPRSAEAG GGSITLDDED LVPSALIKFK PIETDSSVFT GLCNELLEIS EPLT*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MDDMKDKFKG FVKKVSSSSS GKFKGQGRVL GTNSSSSSSS DSYNSVYARF SQPVNPKPTP  60
NPSSHSNSIP SPQKSSAPVH GSSKPASSSA PIPKPSNGFD AFGPLITSSE RSKNGYSLNV  120
FECPICGQAY RSEEDVSAHV ESCVTEGVRV ADVTSNGSDD NNNAVSDGKI DEEVSLLDES  180
CVAAYLSGKP PEGSLEVVLR LFRNIVRDPE NVKFRRVRMG NPKIREAVTD VAGGVELLEL  240
AGFELKEEGG EMWALMEDVP GKERIGLINK VIGFLEPSKV ENMKASIVPV EEDQPAERKK  300
IDRQIKVFFA VSENVAAKIE VPDSFYNLSA IELKREADMR KKKLAESQLL VPKSFREKQA  360
KAARRKYTRT VVRIQFPDGV VLQGVFAPWE PTTALYEFVG LALKDNSLEF DLMHPVIVKR  420
RVIPRSAEAG GGSITLDDED LVPSALIKFK PIETDSSVFT GLCNELLEIS EPLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10021798

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021687190.1	0.0	plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2P2JET9	0.0	A0A2P2JET9_RHIMU; Uncharacterized protein
STRING	Lus10021798	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Link Out ? help Back to Top
Phytozome	Lus10021798

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]