PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 315aa MW: 35685.6 Da PI: 8.9671 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.9 | 1.8e-42 | 112 | 245 | 3 | 136 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssgkaaksaa.ks 97 gkkdrhski+T++g RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL++++k ai++l + ++ s s c++ s ++ + ss+k+ ++++ k Lus10021713 112 GKKDRHSKIYTAKGARDRRMRLSLPIARRFFDLQDMLGFDKASKTIEWLFTMSKSAIQDLQIDvcTTCSTSTCSEISTEVVVM--SSAKSTRNEKvKM 207 89***********************************************************9997555556674444444444..2234444444244 PP TCP 98 kksqksaasalnlakesrakarararertrekmriknkl 136 ++ + ++++++++ke r karararert+ek+++k+k+ Lus10021713 208 ESCIA-STKHRSISKEARDKARARARERTAEKKNKKKKK 245 44444.445899**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-37 | 112 | 241 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.418 | 113 | 171 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.544 | 221 | 238 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MFIPNLDPTD TLNPNNHTPP TTTSASLTSL VHEDHYYHYF SPNPFLYYAP NHDFLDDPSP 60 IILDHDQDHR LPPPPPPPIP EEEEDEEDKM MMMKKKRSEV KVIRKRSTSR GGKKDRHSKI 120 YTAKGARDRR MRLSLPIARR FFDLQDMLGF DKASKTIEWL FTMSKSAIQD LQIDVCTTCS 180 TSTCSEISTE VVVMSSAKST RNEKVKMESC IASTKHRSIS KEARDKARAR ARERTAEKKN 240 KKKKKKMLEE SSYYYSGLPC SSIVDEQCPP CSNSLKTPIS SALPSSSSSL LGLDSGGSEL 300 FMIMGSQYWQ QVFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-13 | 118 | 171 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-13 | 118 | 171 | 1 | 54 | Putative transcription factor PCF6 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 245 | KKNKKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021713 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10021713 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-25 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Lus10021713 |