PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 459aa MW: 51270.1 Da PI: 4.5217 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.6 | 3e-33 | 63 | 201 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 p+G++F+Ptd+e+v++ L+k +g k + ee+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++ Lus10021708 63 PRGVKFDPTDQEIVWHLLAKVGSGGKvphpfI--EEFIPTVDnhdgICYTHPENLP-GVKQDGTASHFFHRAIKAYNTGTRKRRKIQgadlsDFRWHK 157 89************988888888887775332..345777655667**********.777888999******************86644453567*** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg++k+v+ +ge+ g+kk++v+y r k+ekt+Wvmh+y+l Lus10021708 158 TGRTKPVIL-DGEQRGCKKIMVLYasLVRGGKAEKTNWVMHQYHL 201 *********.999***********5435888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-37 | 47 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.353 | 62 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-14 | 63 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MAPTLLSFCL SSWLVDGNRI ATKIKSACDP ENVKWKSNPT IACPNCNHNI DNSDVVQAWP 60 GFPRGVKFDP TDQEIVWHLL AKVGSGGKVP HPFIEEFIPT VDNHDGICYT HPENLPGVKQ 120 DGTASHFFHR AIKAYNTGTR KRRKIQGADL SDFRWHKTGR TKPVILDGEQ RGCKKIMVLY 180 ASLVRGGKAE KTNWVMHQYH LGTAENEEDG QYVISKIFYQ QQQQATKSGK VEEELAENID 240 ASPVITEVDP VTPMLVMPDP PRTEKKNSLD FDLGINSAIA DIDGEPLTQY AELEHLEDED 300 EVQLNPKNRN LDEITENQEL EHLENDVVKP DPGNLDDQPV TENDDHGVGD ESIWWAGESQ 360 NLLSSQQMVD GLSYCEEFLR SQSPSRDGNG DPIPDGKSHL ASQYAKLGAE DLKKDLEECQ 420 KLVLDPVNIY LDTPPEFRLS QLEFGSQESF VAWGGEVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-12 | 62 | 201 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021708 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021649926.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Refseq | XP_021649927.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-160 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | R4N7T7 | 0.0 | R4N7T7_JATCU; NAC transcription factor 092 | ||||
STRING | Lus10021708 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-162 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10021708 |