PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021700
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 331aa    MW: 37207.5 Da    PI: 6.6657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021700genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-06137156120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  n++ H+
  Lus10021700 137 FSCPVCTKTFNRYNNMQMHM 156
                  89*****************9 PP
2zf-C2H214.69.4e-05222244123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +CgksF  + + ++H +++
  Lus10021700 222 FGCRKCGKSFAVRGDWRTHEKNC 244
                  56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-5133159No hitNo description
SMARTSM003550.085137159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-6137156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.951137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SMARTSM00355220185217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.46E-6205242No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5209242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573222242IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQAPPFMTCI SSADHERTTL CCIDDEDLEQ DPAREEDSLL LLSLAPPGKQ QQHITTIKKT  60
IQNHDPSAKT IPSPSSDTTT TTTDAGVTVA LHIGPSPPAT ITSNPSILHN HLGSATPPPL  120
EFWIPSPSQI LVGPTQFSCP VCTKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKPASSML  180
RLPCYCCAEG CKNNIEHPRS RPLKDFRTLQ THYKRKHGVK PFGCRKCGKS FAVRGDWRTH  240
EKNCGKLWFC ICGSDFKHKR SLKDHVRAFG DGHSPHTVDS LDHIDHVNEE DGDEEEEEEE  300
EEDSYEERED HDYGQRYSTR IIGHRGPFSY *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649629.11e-129zinc finger protein WIP6-like
SwissprotQ9FX681e-113ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2C9UKI71e-125A0A2C9UKI7_MANES; Uncharacterized protein
STRINGLus100217000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein